Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_028956.1 Length=52139 Score E Sequences producing significant alignments: (Bits) Value seq3002080 533 5e-147 >seq3002080 Length=1320 Score = 533 bits (590), Expect = 5e-147 Identities = 849/1199 (71%), Gaps = 23/1199 (2%) Strand=Plus/Minus Query 40661 ATTTGTAGAAGATCAAACCTAATCTGACAGTCCCCCGTTTTAAATTACCG-TGTCTGTCA 40719 |||||||| || ||| || | |||||||||| |||||||| |||| | |||||| || Sbjct 1196 ATTTGTAGTAGCTCAGACTTGATCTGACAGTTACCCGTTTT---TTACTGGTGTCTGCCA 1140 Query 40720 GATTA-ATTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCCATCAAGTAAGGTTGC 40778 | ||| || |||||| |||||||| || |||| ||| ||| ||||||||||| ||||| Sbjct 1139 GTTTAGATCTGAGCT-AAATTCTTCTCAGCCCAGATCGTTTTACCATCAAGTAAAGTTGC 1081 Query 40779 CATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATGGTGATTATAATACAT 40838 ||| || |||||||| |||||||| || || ||||| ||||| | | || ||||| | Sbjct 1080 CATTGGCGTTCTGCCGCAGCACATCTTGCCCTGATGAGTTCGCTCATTGTTGTAATATTT 1021 Query 40839 TAACCACTCATCTAAATCCGCTTGTAATGTCGTTAA-ATCCGTATAAATTTTCTTCCTAA 40897 | ||| || || | ||| ||||| ||||||| ||| | ||| | |||||| | | Sbjct 1020 AATCCATTCGTCCAGATCTTTTTGTAGC-TCGTTAATATCGGCATACAGTTTCTTGCGGA 962 Query 40898 ATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATACCATTCG 40957 | | | || || || ||||||| || || || ||||| || |||||||| ||||| | Sbjct 961 AGGTGATCTGATAGAACTCTTGTAGAATGGTCTTGTGGAAGCGCTCGCAGATCCCATTGG 902 Query 40958 TCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTTATCGCTAAATAAAGCT 41017 | || |||||| | ||||||| |||||||| || |||||||| ||||| ||||| |||| Sbjct 901 TTTGCGGATGCATTGCTTTCGTCTTCGTATGATCAATGTCATTGATCGCCAAATACAGCT 842 Query 41018 CATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGTA 41077 |||||| || | || || |||||||| || |||| || || || ||||| || | Sbjct 841 GATAATCATGCTGCTCAACACGACCACAATACTCCGTTCCACGATCCGTCAATATCCGCA 782 Query 41078 ACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAG 41137 |||||||||| | || || ||| | ||||| ||| || || || || || | Sbjct 781 ACATCGGTAATTCATGTTGCTCGAAGAACGGTAATACTCGGTCGTTGAGGGCGTCGGCTG 722 Query 41138 CACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCAA 41197 | | || | |||||| | || || | ||| || || ||||| ||||| || || | Sbjct 721 CCGTTATTGGTGTCTTCGTCGTGTACAATTTACAGAAGGCGACTTTGCTGTAGGTGTCGA 662 Query 41198 TAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTT 41257 ||| || || || ||||| ||||| || || ||||| |||||||| ||||| || |||| Sbjct 661 CAAATGTCTGCTGGTAAATCCGACCAACACCCTTGAGATTGCCCACGTAGAAGGTGTCTT 602 Query 41258 GTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCACAGGCAATCTCATCTTCTT 41317 | ||||||||||| || || || ||||||||||| || || || ||||| | || Sbjct 601 GAGAGCCAAGATAACCGGGATGATGGGTTTCAATTTCCCCGCATGCTTCGTCATCATGTT 542 Query 41318 TCTTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTATAATACCTTGTTCTGCAACCA 41377 |||| || | |||| ||||| | ||||| || || || || | || || Sbjct 541 TCTTCTTTTCAAGGGCTGCAACCTGGGCATCACTCAGAATTATCCCGTCAGTAGCGACTC 482 Query 41378 GTTTTTCCAGGGCGATTAA---TCTTTGCTTAAAATTGGCAAGATGATGACGTAACCAAA 41434 | | |||||| || |||| |||| ||||| || ||||| || |||||||| | Sbjct 481 GCTCTTCCAGTGC-TTTAAGCCGCTTT--TTAAAGTTCTCAAGACCATTGCGTAACCAGA 425 Query 41435 TCGAACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTACGGAGTTCGTTACTCACTC 41494 | || || ||||| | | |||||||||| |||| | | || ||||||||||| || Sbjct 424 TTGACCGAACACCACTGCCAGAAACAAAGACGCCTATTCTGCGCAGTTCGTTACTAGTTC 365 Query 41495 TTACCTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACAACAGCTTGCTCTATTGCCT 41554 | ||| ||| || || | |||| ||| | | | || ||||| ||||| | | Sbjct 364 TGTGCTGACCATGGGCTGGCTGCTCAATGGCATAACTAATGACCGCTTGTTCTATCGTTT 305 Query 41555 CATCAACACGATTTTTTAAGTT--GGGAAC-GCGTCTATTTTGATTCAGCAATGCTTCAA 41611 |||| || |||||||| ||| ||| | ||| || || | | ||| ||| | || | Sbjct 304 CATCGACTCGATTTTTGGTGTTAGGGGTTCTGCGGCTTTTGTTAATCA--AATTC-TCGA 248 Query 41612 CACCACCTTGCTCAACCGCTTGTTGATAACGATAGAATGTATCTCGGCTCATTCCCATTA 41671 || || | |||||| | |||| |||||||| ||||| || | ||||| | Sbjct 247 TCCCGCCATCATCAACCAGCTCACGATAGCGATAGAACGTATCCCGCGATACGCCCATGA 188 Query 41672 CTTTGCAGGCTTGAGAAATATTACCCAGTTCTTCTGCTAAATTTAATAAACCGGTCTTGT 41731 | ||||| |||| ||||| ||||| || ||||| |||||||||| | ||| | |||| Sbjct 187 CCTTGCATGCTTTAGAAACGTTACCGAGCTCTTCCGCTAAATTTAGCAGACCTGCTTTGT 128 Query 41732 GTTTAATGAGAGGGTTGTTAGAATAAAACATGAGAGTTTCCTTTTTGTTTAGA-TTGATT 41790 ||||||||| || ||| ||| || | |||||||||| ||||||||||| || || | Sbjct 127 GTTTAATGATGGGATTGCTAGTATGGAGCATGAGAGTTACCTTTTTGTTTTGATTTAAGA 68 Query 41791 TTTGACACTCATATTCTAAACGGGAAACTCTCACTTTTTAGAG-TGAATTGTCAGATCA 41848 || ||||| | | || ||||||| ||||||| ||| || || || |||||||||| Sbjct 67 TTCGACAC-CTTTATCAAAACGGGTAACTCTCTCTTCTTCAAGAAGATATGTCAGATCA 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160770900206196