Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2924339 132 1e-25 seq2844597 118 2e-21 seq337479 116 8e-21 seq1854222 105 2e-17 seq3002212 93.3 1e-13 seq3005658 91.5 3e-13 seq831659 86.0 1e-11 seq444815 84.2 5e-11 >seq2924339 Length=450 Score = 132 bits (146), Expect = 1e-25 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || ||||| || |||||||| ||||| || || |||| ||||| |||| | || Sbjct 77 CGCAGCCTCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 136 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||| || |||||||| || |||||||| || || || ||||||||||| || ||| Sbjct 137 CGCCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGCGGGATGCCT 196 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||||| |||||||| ||| ||| ||||||||||| Sbjct 197 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 237 >seq2844597 Length=341 Score = 118 bits (130), Expect = 2e-21 Identities = 115/147 (78%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || || || |||||| ||||| ||||| ||| ||||||||||||| |||||||||| Sbjct 337 ATGTCAAGAGTAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCT 278 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 | | | | |||||| || |||||||||||||||||||| |||| | | |||| || Sbjct 277 TGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGT 218 Query 7845 ATATTTA-CGCGTTAGCTTAATTAATA 7870 || ||| ||||||||||| ||| || Sbjct 217 CTACTTATCGCGTTAGCTTCGTTACTA 191 >seq337479 Length=1782 Score = 116 bits (128), Expect = 8e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| | || || || || ||||| || || || |||||||| |||||||| | ||||| Sbjct 453 CAAGTATATAATGTAATCATTACAGCACACGCATTTGTTATAATTTTCTTCATGGTTATA 512 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || |||||||||||||| || || ||||| ||||| ||||| ||| Sbjct 513 CCAATTATAATTGGAGGATTCGGAAATTGATTAGTACCATTAATAATTGGAGCTCCAGAT 572 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAG 7700 || ||||||||| | | || || ||||| Sbjct 573 ATAGCTTTTCCACGAATAAATAACATAAG 601 >seq1854222 Length=138 Score = 105 bits (116), Expect = 2e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| ||||| ||||| |||| ||||| |||| || || | ||||| Sbjct 134 AGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCC 75 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || || || || || |||||| Sbjct 74 TCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCT 15 Query 225622 TGGATCTT 225629 |||||||| Sbjct 14 TGGATCTT 7 >seq3002212 Length=1337 Score = 93.3 bits (102), Expect = 1e-13 Identities = 97/126 (77%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| |||| ||||| || ||||||||||||| ||||||||||| | | | | Sbjct 1337 GGTAAGGTTCTGCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCC 1278 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGCG 7855 ||||| || ||||||||||||| |||||| |||| | | |||| ||| | || | ||| Sbjct 1277 CGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGCGGATTGCTTAATGCG 1218 Query 7856 TTAGCT 7861 |||||| Sbjct 1217 TTAGCT 1212 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/95 (83%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||||||||||||| | ||||||||| || ||| | ||||| Sbjct 674 TGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAA-ACTCCTACGGGAGGCAG 732 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGA 6860 |||||| |||| || |||||||||||||| ||| Sbjct 733 CAGTGGGGAATCTTGCGCAATGGGCGAAAGCCTGA 767 >seq3005658 Length=2342 Score = 91.5 bits (100), Expect = 3e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 || || || || |||| || ||||| || ||||||||||||||| | || ||||| | Sbjct 676 TATAAAGTGATAGTTACTGCTCATGCTTTAGTTATGATTTTCTTTATGGTGATGCCAATA 735 Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677 ||||| || || || ||||| ||| | | || ||||||| || || || |||||||| Sbjct 736 ATGATTGGAGGATTTGGAAACTGACTTATACCCCTAATGATAGGAGCCCCAGATATGGCC 795 Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || ||| | | || || || || || ||| || | || || || || || || Sbjct 796 TTCCCACGAATGAAAAACATGAGATTCTGACTAGTCCCCCCATCTTTCTTACT 848 >seq831659 Length=112 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| ||||| ||||| |||| ||||| |||| || || | |||||| Sbjct 2 AGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 61 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| ||||||||||| || || || ||||| || || || || Sbjct 62 TCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCC 111 >seq444815 Length=5597 Score = 84.2 bits (92), Expect = 5e-11 Identities = 95/126 (75%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| |||| ||||| ||| |||||| || ||| |||| |||||| | | | Sbjct 4544 GGTAAGGTTCTACGCGTTGCATCGAATTAATCCGCATGCTCCGCCGCTTGTGCGGGGCCC 4603 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGCG 7855 ||||| || |||||||||||| |||||||| |||| | | |||| || || || | ||| Sbjct 4604 CGTCAATTCCTTTGAGTTTTAGCCTTGCGGCCGTACTCCCCAGGCGGGGTACTTAAAGCG 4663 Query 7856 TTAGCT 7861 |||||| Sbjct 4664 TTAGCT 4669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1146594608241852