Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_031091.1 Length=43277 Score E Sequences producing significant alignments: (Bits) Value seq481880 118 3e-22 >seq481880 Length=40534 Score = 118 bits (130), Expect = 3e-22 Identities = 360/553 (65%), Gaps = 4/553 (1%) Strand=Plus/Plus Query 676 GAGTGGGCCGACAAGCATTTCTACATGTCGGCCGAGTCCTCTTACAACGAGGGCCGCTGG 735 |||||||| ||| || |||| || | || || || || || |||| || || ||| Sbjct 743 GAGTGGGCTGACGAGAATTTTTATCTTTCTAGTGAATCTTCATATCACGAAGGTCGTTGG 802 Query 736 AAGACTGCGCCATTCCAGGTCGCGATCCTGAACGCGATGGGCAACGACCTGATTCGAGTG 795 || || || ||||| || |||||| | ||||| |||||| || || ||||| Sbjct 803 AAAACGCTGCACTTCCAAGTGGCGATCTTAAACGCAATGGGCTCGGATGCAATCCGAGTT 862 Query 796 GTCAACTTCGTGAAGTCGGCCCGGATCGGTTACACGAAGCTGTTGCTGGCCAACATCGGC 855 || ||| | || |||||||| || | |||||||| ||| || | || || || | Sbjct 863 GTGAACGTGGTCAAGTCGGCTCGACTTGGTTACACCAAGATGCTCCTCGCTGCTATTGCG 922 Query 856 TACAAGATCCAGCACAAGCGCCGCAACGTGATGATGTGGAGTCCGACCGACCCGGACGCC 915 ||| | | |||||||||| || ||||| || || |||||||| | ||||| Sbjct 923 TACTACGTAGAGCACAAGCGTCGGAACGTACTGTCGTTCTCGCCGACCGATACCGACGCT 982 Query 916 GAGGACATCAGCAAGAGCCACGTCAATGGCCTGATCCGCGACGTGCCGGTCATGCTGGAA 975 ||| | | || | ||||| || || || || || ||| || ||| Sbjct 983 GAGAAGTTTTCAAAAACTCACGTTGATACAGCAATTCGTGATGTTCCGACGCTGAAGGAG 1042 Query 976 CTGGCGCCCTGGTTCGGTCGGAAGCACAGCGACAACACCTTGGACAACAAGGTGTTCGCG 1035 || || || |||| ||| ||||||| | || ||||| || || | ||| |||| | Sbjct 1043 CTTGCCCCTTGGTGCGGAATGAAGCACCGAGATAACACGTTAGATCAGAAGCGGTTCTCT 1102 Query 1036 AACCGGC--GCAACCTCTGGATACGCGGCGGCAAGGCCTCTCGGAACTACCGGGAGAAGT 1093 ||| ||| |||| | | ||||||||||| ||||| || |||||||||| || | || Sbjct 1103 AAC-GGCAAGCAAT-TATTCATACGCGGCGGTAAGGCGGCTAGGAACTACCGTGAAACGT 1160 Query 1094 CGCCCGACGAGGTAATCTACGACGAATTGTCGAAATTCGACGCCGACGTCGAGGGCGAAG 1153 | | || | || | || ||||| | | |||||| || | || |||| Sbjct 1161 CCGCTGATGTCGTCGTTTATGACGAGCTAGCCGCATTCGATAAGGATATTGAAAAAGAAG 1220 Query 1154 GCTCGCCGACATTCCTGGGTGACAAGCGCCTGGACGGTGCGGTCTACCCGAAGTCTATCC 1213 | |||||||| || ||||| ||||| || || ||| || ||| ||||| || | Sbjct 1221 GATCGCCGACCACTCTCGGTGATAAGCGTCTTGAAGGTTCGACGTACGGTAAGTCGATAC 1280 Query 1214 GGGGATCTACGCC 1226 | || || || || Sbjct 1281 GTGGTTCAACACC 1293 Score = 95.1 bits (104), Expect = 3e-15 Identities = 243/368 (66%), Gaps = 4/368 (1%) Strand=Plus/Plus Query 4596 ATCCACTCCCCGGGCGGCGACGTCTTCGAGGGGACGGCGATCTATAACCTGCTGCGCAAC 4655 |||||||| || ||||| || || || || ||| || || ||| |||| || || Sbjct 4574 ATCCACTCTCCTGGCGGGTCGGTGTTTGAAGGTTTGGCCATTTACAACATGCTTCGTAAT 4633 Query 4656 CACCCGGCCAGCGTCGACGTGTACATCGATGGCTTGGCTGCCTCGATGGCCTCGGTCATC 4715 ||||| || | || ||||| | |||||||| |||| || || || || || || ||| Sbjct 4634 CACCCAGCAACGGTGAACGTGCATATCGATGGACTGGCCGCTTCTATTGCATCCGTGATC 4693 Query 4716 GCCATGGCCGGCGACACCATCTACATGCCCGAGAACGCCATGATGATGGTGCATAAGCCC 4775 || ||||| || ||||| ||| || || || || || | | ||| | || ||||| Sbjct 4694 GCAATGGCGGGGGACACAATCACTATCCCTGAAAATGCATTTTTAATGATCCACAAGCCT 4753 Query 4776 TGGG--GCATCCAGGGCGGCGATGCGGACGACATGCGCCGCTATGCCGAACTGCTCGACA 4833 ||| | ||| | | || |||||| | | || |||| || |||||||| | Sbjct 4754 TGGAATGTTTCCCAAG--GTGACGCGGACAAGCTCCGTGATGATGCGGATCTGCTCGATA 4811 Query 4834 AGGTCGAGGACACCCTGGTCATGGCCTATGCCAACAAGACCGGGAAGTCCGCCGACGACA 4893 | ||||| | | || | |||||| |||||| |||||| ||| ||||| Sbjct 4812 AAATCGAGAAAAGTTTGCTTGCGGCCTACCGCAACAAAACCGGGCTTCCCGATGACGAAC 4871 Query 4894 TCAAGGCGCTCCTCAAGGAGGAGACCTGGATGAATGGCCGAGAGGCCGTCGCTGCCGGCT 4953 ||| || | || | ||| || ||||||||||| |||||||||| || | Sbjct 4872 TCACTGCCATGATCGCTGCGGAAACGTGGATGAATGGTGCTGAGGCCGTCGAAAAGGGTT 4931 Query 4954 TCGCCGAC 4961 |||||||| Sbjct 4932 TCGCCGAC 4939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133424942976444