Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2924339 118 2e-21 seq2371163 116 9e-21 seq1097346 93.3 1e-13 seq831657 91.5 3e-13 seq823516 89.7 1e-12 seq1193320 87.8 4e-12 seq572346 87.8 4e-12 seq602089 86.0 1e-11 seq602088 86.0 1e-11 seq1193319 84.2 5e-11 >seq2924339 Length=450 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||||||||| ||||| ||||| |||||||| ||||| ||||| || |||||| Sbjct 237 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAG 178 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||||||||| || ||||| || ||||| | || || |||| || ||| Sbjct 177 CAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCCGACTACAAC 118 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||| || || || || || || || || |||| || Sbjct 117 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGAGGCT 80 >seq2371163 Length=190 Score = 116 bits (128), Expect = 9e-21 Identities = 112/142 (79%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| ||||| |||||||| ||||| ||||| || ||||| || || || Sbjct 50 CAGATCTTCGTCAAAACCCTCACAGGCAAAACCATCACTCTTGAGGTCGA--GCCAAGTG 107 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| |||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 108 ACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGC 167 Query 178042 AACGACTTATCTTCGCCGGAAA 178063 | || || ||||| || ||||| Sbjct 168 AGCGTCTGATCTTTGCAGGAAA 189 >seq1097346 Length=122 Score = 93.3 bits (102), Expect = 1e-13 Identities = 96/124 (77%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCG 177990 || || || |||||||| ||||| ||||| || ||||| || || || ||||||||| Sbjct 122 GTCAAGACCCTCACAGGCAAAACCATCACTCTTGAGGTCGA--GCCAAGTGACACCATCG 65 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 |||| ||||| ||||| || |||||||| || ||||| || |||||||| || || | Sbjct 64 AGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAGCGTCTGA 5 Query 178051 TCTT 178054 |||| Sbjct 4 TCTT 1 >seq831657 Length=112 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 178023 GGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGG 178082 || ||||| || |||||||| || || |||||||||||||| ||||| |||||||| | Sbjct 111 GGCATCCCACCAGACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGC 52 Query 178083 ACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||||| | || || ||| |||| ||||| || || || ||| | ||| Sbjct 51 ACTCTTTCTGACTACAACATCCAGAAAGAGTCTACCCTCCATTTGGTT 4 >seq823516 Length=112 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/112 (79%), Gaps = 4/112 (4%) Strand=Plus/Minus Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACG 177996 || |||||||| ||||| ||||| || ||||| || || || |||| |||||||||| Sbjct 111 ACCCTCACAGGCAAAACCATCACTCTTGAGGTCGA--GCCAAGTGACACAATCGAGAACG 54 Query 177997 TCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 |||| ||||| ||||||||||| || ||||| || |||||||| || || Sbjct 53 TCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCACCAGACCAGCAGCGTCT 2 >seq1193320 Length=124 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/124 (77%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACA 177984 || ||||| || || |||||||| ||||| ||||| || ||||| || || || ||| Sbjct 123 ATCTTCGTCAAGACCCTCACAGGCAAAACCATCACTCTTGAGGTCGA--GCCAAGTGACA 66 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 |||| ||||| || || ||||| ||||||||||| || ||||| || |||||||| | Sbjct 65 CCATTGAGAATGTAAAGGCCAAGATCCAGGACAAAGAGGGCATCCCACCAGACCAGCAGC 6 Query 178045 GACT 178048 | || Sbjct 5 GTCT 2 >seq572346 Length=102 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 178023 GGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGG 178082 || ||||| || |||||||| || || |||||||||||||| ||||| |||||||| | Sbjct 101 GGCATCCCACCAGACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGC 42 Query 178083 ACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 |||||| | || || ||| |||| ||||| || || || || Sbjct 41 ACTCTTTCTGACTACAACATCCAGAAAGAGTCTACCCTCCA 1 >seq602089 Length=103 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/103 (80%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || |||||||| ||||| |||||||| ||||| || || || Sbjct 2 CAGATCTTCGTCAAGACCCTCACAGGCAAAACCATCACCCTTGAGGTCGA--GCCAAGTG 59 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||||||||||| ||||| ||||||||||| || Sbjct 60 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGG 102 >seq602088 Length=103 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/103 (80%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || |||||||| ||||| |||||||| ||||| || || || Sbjct 2 CAGATCTTCGTCAAGACCCTCACAGGCAAAACCATCACCCTTGAGGTCGA--GCCAAGTG 59 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||| ||||||||||||||| ||||| ||||||||||| || Sbjct 60 ACACAATCGAGAACGTCAAAGCCAAGATCCAGGACAAAGAGGG 102 >seq1193319 Length=124 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/124 (76%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACA 177984 || ||||| || || |||||||| ||||| ||||| || ||||| || || || ||| Sbjct 123 ATCTTCGTCAAGACCCTCACAGGCAAAACCATCACTCTTGAGGTCGA--GCCAAGTGACA 66 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || ||||| || || ||||| ||||||||||| || ||||| || |||||||| | Sbjct 65 CAATTGAGAATGTAAAGGCCAAGATCCAGGACAAAGAGGGCATCCCACCAGACCAGCAGC 6 Query 178045 GACT 178048 | || Sbjct 5 GTCT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157363181518852