Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 122 1e-22 seq1597 118 1e-21 seq5 87.8 2e-12 >seq1 Length=104615532 Score = 122 bits (134), Expect = 1e-22 Identities = 163/226 (72%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| || || || || | ||| || || || ||||| ||||| | || | ||| | Sbjct 19031885 CCTCATCCCTGCTGATAAGTTCATTACTGAATGTAAGTCCAGGCATGATCCCCCTCTTCT 19031826 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||||| ||||| |||| ||||| ||||||||||| || |||||| Sbjct 19031825 TGAGCCAGAATATGGCGGCAAAACTTCCACTGAAGAAGATTCCTTCTACGGCAGCAAAGC 19031766 Query 24277 CAATAAGTCTTTCTCCATAACCGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGG 24333 ||| || || ||||| ||| | | |||| ||||| || |||||| |||| Sbjct 19031765 CAACAACTCGCTCTCCGTAAGTAGATTCCTCGTCACCGATCCATTTAATAGCCCAGTCGG 19031706 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 |||||||||| ||||| |||||||| || || ||||| || ||||| Sbjct 19031705 CCTTCTTTTTCACACAGGGCATTGTTTCAATGGCATTGAATAGATA 19031660 Score = 116 bits (128), Expect = 4e-21 Identities = 155/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 24522 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 24581 ||||| || ||||||||||||||||| ||||| || || | ||||| || |||| | Sbjct 19031148 TTTTCGTTAACTATTCCGTCACTGGCAGCAAAGAAGGCTAGCACATGAGAGATGAAATGT 19031089 Query 24582 TTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCC 24641 | ||||| | || || | ||| | | || || |||| ||| ||||| || Sbjct 19031088 CTCTCGTCCTTCTTCAGATTTTCCCAGTGTGGCAAGTCCTTGGATAAATCAACTTCCTCG 19031029 Query 24642 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATT 24701 ||||||| || |||||||||||||| || ||||| | ||| || |||||||| || || Sbjct 19031028 GCTGTCCAGAACGATGCCTCTGCCTTCTTGTACATTTGCCATATATCATGATACTGGATG 19030969 Query 24702 GGAAAAATAACAAATCTATTTGGATTTT-TTGCA 24734 ||||| | |||||| | |||| |||| ||||| Sbjct 19030968 GGAAATACAACAAAGCGCCTTGGGTTTTCTTGCA 19030935 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24405 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 24464 || || |||||||||||||| |||||||| ||||| ||||| || ||||| ||||| ||| Sbjct 19031497 TAAGTGTCAATCAAAAGACTGTACATTTCTGAATGGATGTTCTCCATGGCAATTTGGAAT 19031438 Query 24465 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATC 24510 || || |||||||| || || || || |||||| | | ||||| Sbjct 19031437 CCATAAAAACATCTTGCTTCAGTGGATTGGACTTCTTTGCTAAATC 19031392 >seq1597 Length=274804 Score = 118 bits (130), Expect = 1e-21 Identities = 162/226 (72%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| || || || || | ||| || || || ||||| ||||| | || | ||| | Sbjct 211176 CCTCATCCCTGCTGATAAGTTCATTACTGAATGTAAGTCCAGGCATGATACCCCTCTTCT 211235 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||||| ||||| |||| ||||| ||||||||||| || |||||| Sbjct 211236 TCAGCCAGAATATGGCGGCAAAACTTCCACTGAAGAAGATTCCTTCTACGGCAGCAAAGC 211295 Query 24277 CAATAAGTCTTTCTCCATAACCGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGG 24333 ||| || || ||||| ||| | | |||| ||||| || |||||| |||| Sbjct 211296 CAACAACTCGCTCTCCGTAAGTAGATTCCTCGTCACCAATCCATTTAATAGCCCAGTCGG 211355 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 ||||||| || ||||| |||||||| || || ||||| || ||||| Sbjct 211356 CCTTCTTCTTCACACAGGGCATTGTTTCAATGGCATTGAATAGATA 211401 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24405 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 24464 || || |||||||||||||| |||||||| ||||| ||||| || ||||| ||||| ||| Sbjct 211564 TAAGTGTCAATCAAAAGACTGTACATTTCTGAATGGATGTTCTCCATGGCAATTTGGAAT 211623 Query 24465 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATC 24510 || || |||||||| || || || || |||||| | | ||||| Sbjct 211624 CCATAAAAACATCTTGCTTCAGTGGATTGGACTTCTTTGCTAAATC 211669 >seq5 Length=54553330 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| |||| || ||||| || || ||||| || | || || ||||||||||| | Sbjct 25744981 TCCAGGCGTAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTAGGCTCGGCTATATGGATGT 25744922 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| ||| ||||| ||||| ||||| ||||| ||||| || |||||||| | | || | Sbjct 25744921 TCAGAGACTGACTCTGATCAATGAACGCTCCTCTGTCGGCTGCCATTTTGAGCACTGTTT 25744862 Query 52995 TTTGTGGAATTTCCCA 53010 | || | |||||||| Sbjct 25744861 TCTGGGAGATTTCCCA 25744846 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 ||||||||| |||||||| | | | ||| ||||| |||| || ||| |||| Sbjct 25738434 TTCAAACTCCTCTCCCCAGCAGTCATGAAGTCCTGGACACTCATGGGGGTCCATTAACGT 25738375 Query 54010 CCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 54068 ||| ||||||| | ||||| || || |||||||| |||||||||||||| | || | Sbjct 25738374 CCATTCTCCGTTA-CCTTCTACACGCTTCATAAATAGATCAGGAATCCACATGGCGTAGA 25738316 Query 54069 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 54111 | ||||| | | || || ||||| ||||| ||||| || || Sbjct 25738315 ACAGATCGCGAGCTCGCTGCTCCTCTTTTCCAGTATTTTTCTT 25738273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593684202960720