Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq9 105 6e-18 >seq3 Length=91555047 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | || || | ||| | ||||||||||| |||||||||||||| | | Sbjct 54872361 CCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGAATGTTATAGTCTGAC 54872302 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| ||||||||| |||||| || ||| | || | |||||| ||||| ||| Sbjct 54872301 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 54872242 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || |||||| || || | | | || ||| ||| || | Sbjct 54872241 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACT 54872182 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || | || || ||||| || ||||| Sbjct 54872181 TCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54872135 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | || || | ||| | ||||||||||| || ||||||||||| | | Sbjct 54869526 CCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGAC 54869467 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| ||||||||| |||||| || ||| | || | |||||| ||||| ||| Sbjct 54869466 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 54869407 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || |||||| || || | | | || ||| ||| || | Sbjct 54869406 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACT 54869347 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || | || || ||||| || ||||| Sbjct 54869346 TCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54869300 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | || || | ||| | ||||||||||| || ||||||||||| | | Sbjct 54870855 CCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGAC 54870796 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| ||||||||| |||||| || ||| | || | |||||| ||||| ||| Sbjct 54870795 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 54870736 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || |||||| || || | | | || ||| ||| || | Sbjct 54870735 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACT 54870676 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || | || || ||||| || ||||| Sbjct 54870675 TCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54870629 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | || || | ||| | ||||||||||| || ||||||||||| | | Sbjct 54872722 CCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGAC 54872663 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| ||||||||| |||||| || ||| | || | |||||| ||||| ||| Sbjct 54872662 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 54872603 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || |||||| || || | | | || ||| ||| || | Sbjct 54872602 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACT 54872543 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || | || || ||||| || ||||| Sbjct 54872542 TCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54872496 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| |||| || | || || | ||| | ||||||||||| || ||||||||||| | Sbjct 54873294 TCCTCCTCTGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGA 54873235 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 ||| ||| ||||||||| |||||| || ||| | || | |||||| ||||| ||| Sbjct 54873234 CAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGG 54873175 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | || ||||| || |||||| || || | | | || ||| ||| || Sbjct 54873174 AATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTAC 54873115 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| ||| ||||||||||| || | || || ||||| || ||||| Sbjct 54873114 TTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54873067 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | || || | ||| | ||||||||||| || ||||||||||| | | Sbjct 54870500 CCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGAC 54870441 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| ||||||||| |||||| || ||| | || | |||||| ||||| ||| Sbjct 54870440 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 54870381 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || |||||| || || | | | || ||| ||| || | Sbjct 54870380 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACT 54870321 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||||||||| || | || || ||||| || ||||| Sbjct 54870320 TCCAACGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54870274 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 20983 ACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCAT 21042 ||||||| |||||||||||||| | ||| ||| ||||||||| |||||| || ||| Sbjct 54872127 ACTCCTTCTGAATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAA 54872068 Query 21043 AAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCT 21102 | || | |||||| ||||| ||| | || ||||| || |||||| || || | Sbjct 54872067 AGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACAT 54872008 Query 21103 GGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGA 21162 | | || ||| ||| || ||||| ||| ||||||||||| || | || || | Sbjct 54872007 TCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCA 54871948 Query 21163 CAAATATTTGCAT 21175 |||| || ||||| Sbjct 54871947 CAAAAATCTGCAT 54871935 >seq9 Length=97764462 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | |||||||| ||| | || ||||||||||| |||||||| ||| | Sbjct 51001752 CCTCCTCTGAGTCGGAGCACCAGATGAAGTGTAGACTCCTTTTGGATGTTATAATCCAGC 51001693 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | ||||| | ||||| || ||| | || | |||||||||||| || || Sbjct 51001692 AAGGACCTATCATCCTCTAATTGTTTACCTGCAAATATTAATCTCTGCTGGTCTACAGGG 51001633 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || ||| |||| |||||||| ||| || ||| ||| Sbjct 51001632 ATTCCTTCCTTCTCCATGATTTTTTCTTTCACCTTTTTGACCTCCTCCGCGGCCTCAACG 51001573 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | ||| || ||||| || ||||| || || ||||| || |||||| Sbjct 51001572 TCAATGGTGATCGTCTTTCCAGTTAAAGTCTTTACAAAGATCTGCATT 51001525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422233267874924