Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1597 131 2e-25 seq1 131 2e-25 seq9 127 2e-24 seq3 105 7e-18 >seq1597 Length=274804 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||||| || ||||| | || || || | |||||||| || || | || Sbjct 212132 GAGCCCCTGCTGCAAGAAAACCCAAGGCGCTTTGTTGTATTCCCCATCCAGTATCATGAT 212073 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| ||||||||||| | |||||| || || | Sbjct 212072 ATATGGCAAATGTACAAGAAGGCGGAGGCATCGTTCTGGACAGCCGAGGAAGTTGATTTA 212013 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 ||||||||| | ||||||| |||| | ||||| | ||||||||| ||| Sbjct 212012 TCCAAGGACTTGCCACACTGGGAAAATCTGAAGAAGGACGAGAGACATTTCATCTCTCAC 211953 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 ||||| ||||| || || || || || || || || ||||| || ||||| Sbjct 211952 GTGCTAGCCTTCTTTGCTGCTAGTGATGGAATAGTTAACGAAAACCTGGT 211903 Score = 100 bits (110), Expect = 3e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || || ||||| || || ||||| || || || |||||||||| ||||| | ||| Sbjct 211395 TTCAATGCCATTGAAACAATGCCCTGTGTGAAGAAGAAGGCCGACTGGGCTATTAAATGG 211336 Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 || | | | || | | | ||| ||||| | || | ||| || ||||| || || Sbjct 211335 ATTGGTGACGAGGAATCTACTTACGGAGAGCGAGTTGTTGGCTTTGCTGCCGTAGAAGGA 211276 Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127 ||||||| || ||||| ||||||||||| ||||| ||||| | || ||||||| Sbjct 211275 ATCTTCTTCAGTGGAAGTTTTGCCGCCATATTCTGGCTGAAGAAGAGGGGTATCATGCCT 211216 Query 117128 GGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 || || || ||||| || || || ||| |||||| |||| Sbjct 211215 GGACTTACATTCAGTAATGAACTTATCAGCAGGGATGAGG 211176 >seq1 Length=104615532 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||||| || ||||| | || || || | || ||||| || || | || Sbjct 19030925 GAGCCCCTGCTGCAAGAAAACCCAAGGCGCTTTGTTGTATTTCCCATCCAGTATCATGAT 19030984 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| ||||||||||| | |||||| || || | Sbjct 19030985 ATATGGCAAATGTACAAGAAGGCAGAGGCATCGTTCTGGACAGCCGAGGAAGTTGATTTA 19031044 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 ||||||||| | ||||||| |||| | ||||| | ||||||||| || Sbjct 19031045 TCCAAGGACTTGCCACACTGGGAAAATCTGAAGAAGGACGAGAGACATTTCATCTCTCAT 19031104 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 ||||| ||||| || || ||||| ||||| || || ||||| || ||||| Sbjct 19031105 GTGCTAGCCTTCTTTGCTGCCAGTGACGGAATAGTTAACGAAAACCTGGT 19031154 Score = 113 bits (124), Expect = 5e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || || ||||| || || ||||| || || ||| |||||||||| ||||| | ||| Sbjct 19031666 TTCAATGCCATTGAAACAATGCCCTGTGTGAAAAAGAAGGCCGACTGGGCTATTAAATGG 19031725 Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 |||| | | || | | | ||| ||||| | || | ||| || ||||| || || Sbjct 19031726 ATCGGTGACGAGGAATCTACTTACGGAGAGCGAGTTGTTGGCTTTGCTGCCGTAGAAGGA 19031785 Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127 ||||||| || ||||| ||||||||||| ||||||||||| | || ||||||| Sbjct 19031786 ATCTTCTTCAGTGGAAGTTTTGCCGCCATATTCTGGCTCAAGAAGAGGGGGATCATGCCT 19031845 Query 117128 GGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 || || || ||||| || || || ||| |||||| |||| Sbjct 19031846 GGACTTACATTCAGTAATGAACTTATCAGCAGGGATGAGG 19031885 >seq9 Length=97764462 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 40682 TCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCG 40741 || ||| ||||| || ||||| ||||| ||||| |||||||| ||||| | || || | Sbjct 51006583 TCAGAACCATGCAGATCTTCGTGAAAACTCTCACTGGCAAAACAATCACACTTGAAGTTG 51006642 Query 40742 AAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCG 40801 | || | |||| | ||| | |||| ||||| | ||||||||||| |||||| Sbjct 51006643 AGCCCTCAGACACTATCGAAAATGTTAAGGCTAAAATCCAGGACAAAGAGGGAATCCCCC 51006702 Query 40802 CGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 40861 | || ||||| || | |||| || || |||||||| || || | ||||| || || Sbjct 51006703 CAGATCAGCAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGATGGCCGCACTCTGTCCG 51006762 Query 40862 ACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | |||||||||||||| ||| |||| || ||| | || | || ||||| || || Sbjct 51006763 ATTACAACATCCAGAAAGAGTCCACTCTCCATTTGGTTCTTCGTTTGAGAGGAGG 51006817 Score = 120 bits (132), Expect = 3e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| ||||| || ||||| ||||| |||||||| ||||| | || || || || | Sbjct 51006818 AATGCAGATATTTGTCAAAACTCTCACTGGCAAAACAATCACACTTGAAGTTGAGCCCTC 51006877 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| | |||| ||||| | ||||||||||| |||||| | || || Sbjct 51006878 AGACACTATCGAAAATGTTAAGGCTAAAATCCAGGACAAAGAGGGAATCCCCCCAGATCA 51006937 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || |||||||| || || | ||||| || ||| ||||| Sbjct 51006938 GCAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGATGGCCGCACTCTGTCCGATTACAA 51006997 Query 40869 CATCCAGAAGGAGGCCACG 40887 ||||||||| ||| ||||| Sbjct 51006998 CATCCAGAAAGAGTCCACG 51007016 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || || || || || || || || | | || || | | Sbjct 51001981 AATGCAAATCTTCGTGAAGACACTTACAGGAAAGACAATTACTTTAAATGTAGAGGGCGA 51002040 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | ||| | || | || || || || |||||||| || ||| ||||| Sbjct 51002041 TGACAGTATCGAAAATGTTAAAAAGAAGATCCTTGAAAAAGAGGGAATACCCCTTGACCA 51002100 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| || || || || || || || | |||| || | ||||||||| Sbjct 51002101 ACAACGTTTGATCTTTGCCGGGAAGCAACTCGAGGATCACCGCATACTGAGCGACTACAA 51002160 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| ||||||||| ||||||| || | || | || ||||| || || Sbjct 51002161 CATACAGAAGGAGTCCACGCTTCACTTGGTACTCCGTTTGAGAGGGGG 51002208 >seq3 Length=91555047 Score = 105 bits (116), Expect = 7e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || ||| || | Sbjct 54869300 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54869359 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | || || ||||| || ||| | ||||| Sbjct 54869360 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54869419 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTACA 40867 || || | |||| || || |||||| |||| |||| || ||| ||| ||||| | Sbjct 54869420 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCA--GACTATA 54869477 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||| |||| || ||||| || Sbjct 54869478 ACATCCAGAAGGAGTCCACACTCCATCTTGT 54869508 Score = 105 bits (116), Expect = 7e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || ||| || | Sbjct 54870629 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54870688 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | || || ||||| || ||| | ||||| Sbjct 54870689 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54870748 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTACA 40867 || || | |||| || || |||||| |||| |||| || ||| ||| ||||| | Sbjct 54870749 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCA--GACTATA 54870806 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||| |||| || ||||| || Sbjct 54870807 ACATCCAGAAGGAGTCCACACTCCATCTTGT 54870837 Score = 105 bits (116), Expect = 7e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || ||| || | Sbjct 54872496 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54872555 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | || || ||||| || ||| | ||||| Sbjct 54872556 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54872615 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTACA 40867 || || | |||| || || |||||| |||| |||| || ||| ||| ||||| | Sbjct 54872616 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCA--GACTATA 54872673 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||| |||| || ||||| || Sbjct 54872674 ACATCCAGAAGGAGTCCACACTCCATCTTGT 54872704 Score = 105 bits (116), Expect = 7e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || ||| || | Sbjct 54873067 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54873126 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | || || ||||| || ||| | ||||| Sbjct 54873127 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54873186 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTACA 40867 || || | |||| || || |||||| |||| |||| || ||| ||| ||||| | Sbjct 54873187 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCA--GACTATA 54873244 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||| |||| || ||||| || Sbjct 54873245 ACATCCAGAAGGAGTCCACACTCCATCTTGT 54873275 Score = 100 bits (110), Expect = 3e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| | || || ||| || | Sbjct 54870274 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACGTTGGAAGTAGAACCCTCT 54870333 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | || || ||||| || ||| | ||||| Sbjct 54870334 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54870393 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTACA 40867 || || | |||| || || |||||| |||| |||| || ||| ||| ||||| | Sbjct 54870394 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCA--GACTATA 54870451 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||| |||| || ||||| || Sbjct 54870452 ACATCCAGAAGGAGTCCACACTCCATCTTGT 54870482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515186747630640