Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq9 116 6e-21 seq3 95.1 2e-14 >seq9 Length=97764462 Score = 116 bits (128), Expect = 6e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || ||||| || || ||||| || ||| |||| | || | | || Sbjct 51001754 ATGCAGATCTTTGTGAAAACACTCACTGGTAAAACCATCACTCTAGATGTAGATGAAGAT 51001813 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||| || || | ||| |||| |||||||| || || || |||||||||||||| Sbjct 51001814 GATAGCATAGAGAACGTGAAAAAGAAGATTCAAGACAAGGAGGGAATACCACCTGATCAG 51001873 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || ||||| | ||||| ||| | | ||| |||||| Sbjct 51001874 CAACGCTTGATTTTTGCCGGGAAACAGCTCGAGGACGATCGGCAACTGAAAGCTTATAAC 51001933 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || |||||||| |||||| | || ||||| Sbjct 51001934 ATACAAAAAGAGTCAACTCTCCACTTGGT 51001962 >seq3 Length=91555047 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 205651 TCAGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTA 205710 || || || |||| ||| ||||| || | | | | | ||||| | |||||| ||| Sbjct 20985571 TCTGGATTTTTTTCTATCTTATTAATGACCTCTTTCAGCTGATCCACACCTTGACCAGTA 20985512 Query 205711 TAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACT 205770 |||| ||||| ||| || | |||| |||||||||||| | ||| || || ||||| ||| Sbjct 20985511 TAATCTGTATGCATGTCTTTGTATTCAGCACCAAAATGTCTCCACTGGAATCCATACACT 20985452 Query 205771 GGACCTAAATCACCT 205785 ||||||||||||||| Sbjct 20985451 GGACCTAAATCACCT 20985437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755408415715200