Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq9 141 8e-29 >seq9 Length=97764462 Score = 141 bits (156), Expect = 8e-29 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| |||| || |||||||| || |||||||||||| || |||||| ||| || Sbjct 51006799 ACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCA 51006740 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||||||||| || |||| | |||||||||||| || || || ||||| ||||| Sbjct 51006739 AGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGG 51006680 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||||| | ||||| ||||| | | ||| || || | || | |||||| Sbjct 51006679 ATTTTAGCCTTAACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTG 51006620 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || || |||||||| || || |||||||||| Sbjct 51006619 CCAGTGAGAGTTTTCACGAAGATCTGCATGG 51006589 Score = 138 bits (152), Expect = 1e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAGTGGATT-GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 ||||| | || || |||||||| || |||||||||||| || |||||| ||| || | Sbjct 51007026 CAAGTTGTTTCGTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAA 51006967 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||||||||| || |||| | |||||||||||| || || || ||||| ||||| | Sbjct 51006966 GCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGA 51006907 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 |||| ||||| | ||||| ||||| | | ||| || || | || | ||||||| Sbjct 51006906 TTTTAGCCTTAACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGC 51006847 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || |||||||| ||||| |||||||| Sbjct 51006846 CAGTGAGAGTTTTGACAAATATCTGCAT 51006819 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||||||||| ||||| ||| | ||| || ||||| Sbjct 51001963 CACCAAGTGGAGAGTTGACTCTTTTTGTATGTTATAAGCTTTCAGTTGCCGATCGTCCTC 51001904 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||||||| || || | || | || |||||||| || ||||| |||||||||||| Sbjct 51001903 GAGCTGTTTCCCGGCAAAAATCAAGCGTTGCTGATCAGGTGGTATTCCCTCCTTGTCTTG 51001844 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTC-TCGACCTCGACGGTCACCGTTT 118707 ||| || | ||| || | || | | | | | | || || || || | || | |||| Sbjct 51001843 AATCTTCTTTTTCACGTTCTCTATGCTAT-CATCTTCATCTACATCTAGAGTGATGGTTT 51001785 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || ||||| ||||| |||||||| Sbjct 51001784 TACCAGTGAGTGTTTTCACAAAGATCTGCAT 51001754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433803757254988