Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq11 111 2e-19 seq9 111 2e-19 >seq11 Length=59032463 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 32299747 AAAAATGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 32299806 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 32299807 TTACCACTATACTACCGAGGA 32299827 >seq9 Length=97764462 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 2228863 AAAAATGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2228922 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 2228923 TTACCACTATACTACCGAGGA 2228943 Score = 109 bits (120), Expect = 6e-19 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 51337011 GAAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 51337070 Query 60116 CTCACCACTATACTACCGAGGAT 60138 || |||||||||||||||||||| Sbjct 51337071 CTTACCACTATACTACCGAGGAT 51337093 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATC-AGC 43015 |||||||| | || | ||||| ||| | ||| ||||||||| || || ||||| ||| Sbjct 51001752 CCTCCTCTGAGTCGGAGCACCAGATGAAGTGTAGACTCCTTTTGGATGTTATAATCCAGC 51001693 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || | || || || |||| || ||||| || ||||| | || ||||||||| | || Sbjct 51001692 AAG-GACCTATCATCCTCTAATTGTTTACCTGCAAATATTAATCTCTGCTGGTCTACAGG 51001634 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||| ||||||||||||| ||| | | | ||| || | || || Sbjct 51001633 GATTCCTTCCTTCTCCATGATTTTTTCTTTCACCTTTTTGACCTCCTCCGCGGCCTCAAC 51001574 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 || | ||||| || || || |||| |||||||||||||| |||||| || Sbjct 51001573 GTCAATGGTGATCGTCTTTCCAGTTAAAGTCTTTACAAAGATCTGCATTGTT 51001522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571781582638920