Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2 86.0 4e-12 seq9 84.2 1e-11 >seq2 Length=60074718 Score = 86.0 bits (94), Expect = 4e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 34180 CACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTC 34239 ||||| |||||| ||| |||||||| || |||||||| |||| |||| |||| || Sbjct 56214032 CACCAAGTGTAAGGTAGACTCTTTCTGGATATTGTAGTCCGACAAGGTACGGCCGTCTTC 56214091 Query 34240 CAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCG 34276 ||||||||||| || ||||| | || |||||||||| Sbjct 56214092 TAACTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCG 56214128 >seq9 Length=97764462 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| |||||||| |||||||| ||| | || || | ||| || || || || Sbjct 51006781 TCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCAAAG 51006722 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | |||||||| || ||| | | ||| ||||| || || ||| | || Sbjct 51006721 ATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTAACATTT 51006662 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | || || || | ||||| |||||||| |||||||||||||| Sbjct 51006661 TCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGTGAGAGTTTTCACG 51006602 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 51006601 AAGATCTGCAT 51006591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323052159239840