Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1597 87.8 2e-12 seq1 82.4 7e-11 >seq1597 Length=274804 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 16624 GTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtt 16683 ||||||||||||||||||||| ||||| ||||| || || || | ||| || |||| Sbjct 211908 GTTTTCGTTAACTATTCCATCACTAGCAGCAAAGAAGGCTAGCACGTGAGAGATGAAATG 211967 Query 16684 tttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTC 16743 | | |||| | || ||| ||||| | || || || |||||||| || || || Sbjct 211968 TCTCTCGTCCTTCTTCAGATTTTCCCAGTGTGGCAAGTCCTTGGATAAATCAACTTCCTC 212027 Query 16744 TACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791 | ||||| || || || | ||||| || ||||||| |||||| || Sbjct 212028 GGCTGTCCAGAACGATGCCTCCGCCTTCTTGTACATTTGCCATATATC 212075 >seq1 Length=104615532 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 15931 CATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTC 15990 ||| ||| ||| || |||||||| | |||||||| ||||| || |||||||| || || Sbjct 19032870 CATTACTCCCATCTTCTGATATTCTCCGACTCTCTTCTCAAAAAAGTTTGTTTTACCCTC 19032811 Query 15991 TAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 || || || | |||||| || ||||||||||||| Sbjct 19032810 TAGAGAGATTTGTTCCATGAAGTCAAAAGGATTTT 19032776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462482867525400