Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq9 113 4e-20 seq3 105 6e-18 seq5 104 2e-17 seq1 82.4 7e-11 >seq9 Length=97764462 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || ||||||||| | || || || ||||||||| | |||||||| | | Sbjct 51001526 ATGCAGATCTTTGTAAAGACTTTAACTGGAAAGACGATCACCATTGACGTTGAGGCCGCG 51001585 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || ||| ||| ||| ||| | | ||| ||| |||||||| | || |||||| Sbjct 51001586 GAGGAGGTCAAAAAGGTGAAAGAAAAAATCATGGAGAAGGAAGGAATCCCTGTAGACCAG 51001645 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | ||||||| || || ||||| || || || || | | || ||||||||| Sbjct 51001646 CAGAGATTAATATTTGCAGGTAAACAATTAGAGGATGATAGGTCCTTGCTGGATTATAAC 51001705 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || || ||||||||||| || |||| || || || Sbjct 51001706 ATCCAAAAGGAGTCTACACTTCATCTGGTGCTCCGACTCAGAGGAGG 51001752 >seq3 Length=91555047 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| ||||||||||| || |||||| | || || ||||| || Sbjct 54872135 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54872194 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||| ||||| || | || || ||||| Sbjct 54872195 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54872254 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| ||||||||||| ||| | || || || |||||| Sbjct 54872255 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54872314 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || || || || || ||||| |||||| Sbjct 54872315 ATTCAGAAGGAGTCCACACTCCATCTTGTACTT 54872347 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| ||||||||||| || |||||| | || || ||||| || Sbjct 54873067 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54873126 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||| ||||| || | || || ||||| Sbjct 54873127 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54873186 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| ||||||||||| ||| | || || || |||||| Sbjct 54873187 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54873246 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || || || ||||| |||||| | || || || || Sbjct 54873247 ATCCAGAAGGAGTCCACACTCCATCTTGTACTTCGTCTCAGAGGAGG 54873293 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || ||||| ||||||||||| || |||||| | || || ||||| || Sbjct 54869299 CATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTC 54869358 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||| ||||| || | || || ||||| Sbjct 54869359 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCA 54869418 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | | || || ||||| ||||||||||| ||| | || || || ||||| Sbjct 54869419 ACAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAA 54869478 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || || || || || || ||||| |||||| Sbjct 54869479 CATCCAGAAGGAGTCCACACTCCATCTTGTACTT 54869512 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| ||||||||||| || |||||| | || || ||||| || Sbjct 54870629 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54870688 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||| ||||| || | || || ||||| Sbjct 54870689 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54870748 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| ||||||||||| ||| | || || || |||||| Sbjct 54870749 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54870808 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || || || || ||||| |||||| Sbjct 54870809 ATCCAGAAGGAGTCCACACTCCATCTTGTACTT 54870841 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| ||||||||||| || |||||| | || || ||||| || Sbjct 54872496 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54872555 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||| ||||| || | || || ||||| Sbjct 54872556 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54872615 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| ||||||||||| ||| | || || || |||||| Sbjct 54872616 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54872675 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || || || || ||||| |||||| Sbjct 54872676 ATCCAGAAGGAGTCCACACTCCATCTTGTACTT 54872708 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| ||||||||||| || ||||| | || || ||||| || Sbjct 54870274 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACGTTGGAAGTAGAACCCTCT 54870333 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||| ||||| || | || || ||||| Sbjct 54870334 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54870393 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| ||||||||||| ||| | || || || |||||| Sbjct 54870394 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54870453 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || || || || ||||| |||||| Sbjct 54870454 ATCCAGAAGGAGTCCACACTCCATCTTGTACTT 54870486 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| ||||||||||| || |||||| | || || ||||| || Sbjct 54871935 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54871994 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||| ||||| || | || || ||||| Sbjct 54871995 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54872054 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| ||||||||||| ||| | || || || |||||| Sbjct 54872055 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54872114 Query 31373 ATTCAAAAAGA 31383 ||||| || || Sbjct 54872115 ATTCAGAAGGA 54872125 >seq5 Length=54553330 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||| || || ||||||| ||||| || ||||| | ||||||||||| ||||| || || Sbjct 25738359 TTCTACACGCTTCATAAATAGATCAGGAATCCACATGGCGTAGAACAGATCGCGAGCTCG 25738300 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 | ||||||||| || || || || || | ||||| || | || | ||| | ||||| Sbjct 25738299 CTGCTCCTCTTTTCCAGTATTTTTCTTGCAGTCCAAGAATTGGAATATGTCTGGGTGCCA 25738240 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||| ||||| | |||||| || || ||||||| Sbjct 25738239 GGGCTCTAGGTAGATGGCAAAAGCTCCTGGTCTCT 25738205 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 23047 CACCTCGTCTTTGGACG--TGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATC 23104 |||||||||| |||| | ||||||||||| || ||||| ||||| ||||| ||||| Sbjct 25738994 CACCTCGTCT--GGACTGCTATACTCTACAATCTCTGTACACAGATTACTACATTTTATG 25738937 Query 23105 GTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGC 23164 ||||| | ||| || ||| |||||| || || |||||||| | |||||| || Sbjct 25738936 GTGCCTAGATTTTGTTGATTGGATTTTCGGTTACAATGGTCCTTGTATAACATGTAAGGT 25738877 Query 23165 GTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 || || ||||| || ||||||||||| || ||||| Sbjct 25738876 GTACCAGTCTCCGTTTGGGACTCGATGATAGCATACCACA 25738837 >seq1 Length=104615532 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC 58158 ||||||| ||| ||||||||| || | |||| | || |||| || || || ||| Sbjct 19032244 AGGGTCTACATTGTGATTTTGCCTGTTTGATGTTCAACCATCTTGTGAACAAGCCCTCGC 19032303 Query 58159 GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCG 58218 | | |||||| ||| |||| |||||| || |||||| | || || | || | Sbjct 19032304 AGAAACGCATCCATTCCATCATCAGCGAGGCAGTAAGAATCGAACAAGAATTCCTGACGG 19032363 Query 58219 AAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGT 58278 |||| || || || | | | || |||||| | ||||| | ||||||| |||| Sbjct 19032364 AAGCGCTCCCAGTAAACCTCATAGGAATGAACTGTACGCTGATGAAACAGTACATCGAGT 19032423 Query 58279 TTGTTGCCGACAGACTTTTGCTCGAACT 58306 ||||||| |||||||| ||| | ||||| Sbjct 19032424 TTGTTGCAGACAGACTGTTGGTTGAACT 19032451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445738322288880