Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1597 87.8 4e-12 seq1 84.2 4e-11 >seq1597 Length=274804 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/160 (73%), Gaps = 7/160 (4%) Strand=Plus/Minus Query 101855 AAGAAGAAGGAGCAGTGGGCTATTAATTGGAT----GCAAAGCAATA-ACGATTTGGCGG 101909 |||||||||| | ||||||||||| ||||| | || ||| || || | | Sbjct 211365 AAGAAGAAGGCCGACTGGGCTATTAAATGGATTGGTGACGAGGAATCTAC--TTACGGAG 211308 Query 101910 AACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCA 101969 | | | |||||| ||||||||| || |||||||||||||| ||||| || || ||| Sbjct 211307 AGCGAGTTGTTGGCTTTGCTGCCGTAGAAGGAATCTTCTTCAGTGGAAGTTTTGCCGCCA 211248 Query 101970 TTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCAC 102009 | |||||| | ||||| |||||||| ||||||| || || Sbjct 211247 TATTCTGGCTGAAGAAGAGGGGTATCATGCCTGGACTTAC 211208 >seq1 Length=104615532 Score = 84.2 bits (92), Expect = 4e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||||| ||||||||| || |||||||||||||| ||||| || || |||| |||| Sbjct 19031760 TTGTTGGCTTTGCTGCCGTAGAAGGAATCTTCTTCAGTGGAAGTTTTGCCGCCATATTCT 19031819 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCAC 102009 || ||||||| ||||| || ||||||| || || Sbjct 19031820 GGCTCAAGAAGAGGGGGATCATGCCTGGACTTAC 19031853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989520110292245