Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq9 86.0 6e-12 >seq9 Length=97764462 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/118 (78%), Gaps = 4/118 (3%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GTCTT 139613 || ||||| | || ||||||||||| ||||||||| | ||| | ||| ||| ||| | Sbjct 51001962 ACCAAGTGGAGAGTTGACTCTTTTTGTATGTTATAAGCTTTCAGT-TGC-CGATCGTCCT 51001905 Query 139614 CGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 |||||||||| || ||| | |||| ||||||||||| || ||||| || || ||||| Sbjct 51001904 CGAGCTGTTTCCCGGCAAAAATCAAGCGTTGCTGATCAGGTGGTATTCCCTCCTTGTC 51001847 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| |||||||| ||||| ||||||||||| || | || || || | ||| Sbjct 51001728 TGAAGTGTAGACTCCTTTTGGATGTTATAATCCAGCAAGGACCTATCATCCTCTAATTGT 51001669 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||| ||| | || | | ||||| || ||| || ||||| || || |||||||| Sbjct 51001668 TTACCTGCAAATATTAATCTCTGCTGGTCTACAGGGATTCCTTCCTTCTCCATGATTTTT 51001609 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 | ||| | || || || || | || ||| || |||| ||| | |||||| || || Sbjct 51001608 TCTTTCACCTTTTTGACCTCCTCCGCGGCCTCAACGTCAATGGTGATCGTCTTTCCAGTT 51001549 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 || || ||||| || || ||||| Sbjct 51001548 AAAGTCTTTACAAAGATCTGCAT 51001526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496032754168800