Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 145 1e-29 seq1597 140 5e-28 seq5 93.3 6e-14 >seq1 Length=104615532 Score = 145 bits (160), Expect = 1e-29 Identities = 168/226 (74%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || || || || ||||| || || || ||||| ||||| | || | ||| | Sbjct 19031885 CCTCATCCCTGCTGATAAGTTCATTACTGAATGTAAGTCCAGGCATGATCCCCCTCTTCT 19031826 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||||| ||||| ||| ||||||||||||||||| || |||||| Sbjct 19031825 TGAGCCAGAATATGGCGGCAAAACTTCCACTGAAGAAGATTCCTTCTACGGCAGCAAAGC 19031766 Query 50102 CAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGG 50158 |||||| || |||||| ||| | | | |||| ||||| || |||||| |||| Sbjct 19031765 CAACAACTCGCTCTCCGTAAGTAGATTCCTCGTCACCGATCCATTTAATAGCCCAGTCGG 19031706 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204 |||||||||| ||||| ||||| ||||| |||||||| || ||||| Sbjct 19031705 CCTTCTTTTTCACACAGGGCATTGTTTCAATGGCATTGAATAGATA 19031660 Score = 113 bits (124), Expect = 6e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 50347 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGT 50406 ||||| || ||||||||||||||||| ||||| || || | ||||| || |||||| Sbjct 19031148 TTTTCGTTAACTATTCCGTCACTGGCAGCAAAGAAGGCTAGCACATGAGAGATGAAATGT 19031089 Query 50407 TTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCC 50466 | |||| | || || | ||| | | || || |||| ||| ||||| || Sbjct 19031088 CTCTCGTCCTTCTTCAGATTTTCCCAGTGTGGCAAGTCCTTGGATAAATCAACTTCCTCG 19031029 Query 50467 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATT 50526 ||||||| || |||||||||||||| || ||||| | ||| || |||||||| ||||| Sbjct 19031028 GCTGTCCAGAACGATGCCTCTGCCTTCTTGTACATTTGCCATATATCATGATACTGGATG 19030969 Query 50527 GGGAAAATAACAAATCTATTTGGATTT 50553 || || | |||||| | |||| ||| Sbjct 19030968 GGAAATACAACAAAGCGCCTTGGGTTT 19030942 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 ||||| || ||||||||||| |||||||| ||||| ||||| || ||||| || || ||| Sbjct 19031497 TAAGTGTCAATCAAAAGACTGTACATTTCTGAATGGATGTTCTCCATGGCAATTTGGAAT 19031438 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATC 50335 || || |||||||| || || || || |||||| | | ||||| Sbjct 19031437 CCATAAAAACATCTTGCTTCAGTGGATTGGACTTCTTTGCTAAATC 19031392 >seq1597 Length=274804 Score = 140 bits (154), Expect = 5e-28 Identities = 167/226 (74%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || || || || ||||| || || || ||||| ||||| | || | ||| | Sbjct 211176 CCTCATCCCTGCTGATAAGTTCATTACTGAATGTAAGTCCAGGCATGATACCCCTCTTCT 211235 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||||| ||||| ||| ||||||||||||||||| || |||||| Sbjct 211236 TCAGCCAGAATATGGCGGCAAAACTTCCACTGAAGAAGATTCCTTCTACGGCAGCAAAGC 211295 Query 50102 CAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGG 50158 |||||| || |||||| ||| | | | |||| ||||| || |||||| |||| Sbjct 211296 CAACAACTCGCTCTCCGTAAGTAGATTCCTCGTCACCAATCCATTTAATAGCCCAGTCGG 211355 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204 ||||||| || ||||| ||||| ||||| |||||||| || ||||| Sbjct 211356 CCTTCTTCTTCACACAGGGCATTGTTTCAATGGCATTGAATAGATA 211401 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 ||||| || ||||||||||| |||||||| ||||| ||||| || ||||| || || ||| Sbjct 211564 TAAGTGTCAATCAAAAGACTGTACATTTCTGAATGGATGTTCTCCATGGCAATTTGGAAT 211623 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATC 50335 || || |||||||| || || || || |||||| | | ||||| Sbjct 211624 CCATAAAAACATCTTGCTTCAGTGGATTGGACTTCTTTGCTAAATC 211669 >seq5 Length=54553330 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| ||||||| ||||| || || ||||| || | || || ||||||||||| | Sbjct 25744981 TCCAGGCGTAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTAGGCTCGGCTATATGGATGT 25744922 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| ||| ||||| ||||| ||||| ||||| ||||| || |||||||| | | || | Sbjct 25744921 TCAGAGACTGACTCTGATCAATGAACGCTCCTCTGTCGGCTGCCATTTTGAGCACTGTTT 25744862 Query 78905 TTTGTGGAATTTCCCA 78920 | || | |||||||| Sbjct 25744861 TCTGGGAGATTTCCCA 25744846 Score = 87.8 bits (96), Expect = 3e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 79851 ATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACA 79910 ||||| | ||| ||||| |||||||| || | | ||| ||||| || | || Sbjct 25738443 ATATAGTTTTTCAAACTCCTCTCCCCAGCAGTCATGAAGTCCTGGACACTCATGGGGGTC 25738384 Query 79911 CATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 79970 ||| |||| ||| ||||| | | | | ||| || |||||||| |||||||||||||| | Sbjct 25738383 CATTAACGTCCATTCTCCGTTACCTTCTACACGCTTCATAAATAGATCAGGAATCCACAT 25738324 Query 79971 AGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 80030 || || ||||| | | || |||||||| ||||| ||||| || || || | Sbjct 25738323 GGCGTAGAACAGATCGCGAGCTCGCTGCTCCTCTTTTCCAGTATTTTTCTTGCAGTCCAA 25738264 Query 80031 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTC 80086 ||| | || || | ||||| || || | ||| ||||| | | |||| |||| Sbjct 25738263 GAATTGGAATATGTCTGGGTGCCAGGGCTCTAGGTAGATGGCAAAAGCTCCTGGTC 25738208 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 || ||||| ||||| || | |||||||| ||||| ||||| ||||||| ||| |||| Sbjct 25737766 TTATTTCCGCCCTGGTCCACATATCTAGCTGTGTTGTTATATACTCTCAGCATGGGAAGT 25737707 Query 80149 ATACCATTGGATGTACCATTGGTC 80172 | |||||| ||||||||||||||| Sbjct 25737706 AAACCATTAGATGTACCATTGGTC 25737683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718223558043960