Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 136 5e-27 seq1597 131 2e-25 seq5 84.2 3e-11 >seq1 Length=104615532 Score = 136 bits (150), Expect = 5e-27 Identities = 166/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| || || || | ||| || || || ||||| ||||| | || | ||| | Sbjct 19031885 CCTCATCCCTGCTGATAAGTTCATTACTGAATGTAAGTCCAGGCATGATCCCCCTCTTCT 19031826 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| | ||||| |||| ||||||||||||||||| || |||||| Sbjct 19031825 TGAGCCAGAATATGGCGGCAAAACTTCCACTGAAGAAGATTCCTTCTACGGCAGCAAAGC 19031766 Query 42207 CAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCACTTTTGAGCCCAATCGG 42263 ||| || || |||||| ||| | | |||| ||||| || |||||| |||| Sbjct 19031765 CAACAACTCGCTCTCCGTAAGTAGATTCCTCGTCACCGATCCATTTAATAGCCCAGTCGG 19031706 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 |||||||||| ||||| ||||| ||||| |||||||| || ||||| Sbjct 19031705 CCTTCTTTTTCACACAGGGCATTGTTTCAATGGCATTGAATAGATA 19031660 Score = 111 bits (122), Expect = 2e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 42452 TTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 42511 |||||||| ||||||||||||||||| ||||| || || | ||||| || |||| | Sbjct 19031148 TTTTCGTTAACTATTCCGTCACTGGCAGCAAAGAAGGCTAGCACATGAGAGATGAAATGT 19031089 Query 42512 TTTTCGTCCGGTGTTAATTTATTCCAATCATTGATA-TCTTTAGATATATCTACTTCTTC 42570 | |||||| | || | | |||| | | | | || || |||| ||| ||||| || Sbjct 19031088 CTCTCGTCCT-TCTTCAGATTTTCCCAGTGTGGCAAGTCCTTGGATAAATCAACTTCCTC 19031030 Query 42571 TACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAAT 42630 | ||||| || ||||| |||||||| || ||||| | ||| ||||||||||| || || Sbjct 19031029 GGCTGTCCAGAACGATGCCTCTGCCTTCTTGTACATTTGCCATATATCATGATACTGGAT 19030970 Query 42631 TGGGAAAATAACAAATCTATTTGGATTT 42658 || || | |||||| | |||| ||| Sbjct 19030969 GGGAAATACAACAAAGCGCCTTGGGTTT 19030942 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || || || ||||||||||| |||||||||||||| ||||| || ||||| || || ||| Sbjct 19031497 TAAGTGTCAATCAAAAGACTGTACATTTCTGAATGGATGTTCTCCATGGCAATTTGGAAT 19031438 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATC 42440 || || |||||||| || || || || |||||| | | ||||| Sbjct 19031437 CCATAAAAACATCTTGCTTCAGTGGATTGGACTTCTTTGCTAAATC 19031392 >seq1597 Length=274804 Score = 131 bits (144), Expect = 2e-25 Identities = 165/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| || || || | ||| || || || ||||| ||||| | || | ||| | Sbjct 211176 CCTCATCCCTGCTGATAAGTTCATTACTGAATGTAAGTCCAGGCATGATACCCCTCTTCT 211235 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| | ||||| |||| ||||||||||||||||| || |||||| Sbjct 211236 TCAGCCAGAATATGGCGGCAAAACTTCCACTGAAGAAGATTCCTTCTACGGCAGCAAAGC 211295 Query 42207 CAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCACTTTTGAGCCCAATCGG 42263 ||| || || |||||| ||| | | |||| ||||| || |||||| |||| Sbjct 211296 CAACAACTCGCTCTCCGTAAGTAGATTCCTCGTCACCAATCCATTTAATAGCCCAGTCGG 211355 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 ||||||| || ||||| ||||| ||||| |||||||| || ||||| Sbjct 211356 CCTTCTTCTTCACACAGGGCATTGTTTCAATGGCATTGAATAGATA 211401 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 42452 TTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 42511 |||||||| |||||||| ||||| || ||||| || || | || || || |||| | Sbjct 211909 TTTTCGTTAACTATTCCATCACTAGCAGCAAAGAAGGCTAGCACGTGAGAGATGAAATGT 211968 Query 42512 TTTTCGTCCGGTGTTAATTTATTCCAATCATTGATA-TCTTTAGATATATCTACTTCTTC 42570 | |||||| | || | | |||| | | | | || || |||| ||| ||||| || Sbjct 211969 CTCTCGTCCT-TCTTCAGATTTTCCCAGTGTGGCAAGTCCTTGGATAAATCAACTTCCTC 212027 Query 42571 TACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAAT 42630 | ||||| || ||||| || ||||| || ||||| | ||| ||||||||||| || || Sbjct 212028 GGCTGTCCAGAACGATGCCTCCGCCTTCTTGTACATTTGCCATATATCATGATACTGGAT 212087 Query 42631 TGGGAAAATAACAAATCTATTTGGATTT 42658 ||||| | |||||| | |||| ||| Sbjct 212088 GGGGAATACAACAAAGCGCCTTGGGTTT 212115 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || || || ||||||||||| |||||||||||||| ||||| || ||||| || || ||| Sbjct 211564 TAAGTGTCAATCAAAAGACTGTACATTTCTGAATGGATGTTCTCCATGGCAATTTGGAAT 211623 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATC 42440 || || |||||||| || || || || |||||| | | ||||| Sbjct 211624 CCATAAAAACATCTTGCTTCAGTGGATTGGACTTCTTTGCTAAATC 211669 >seq5 Length=54553330 Score = 84.2 bits (92), Expect = 3e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 71934 ATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAA-TCCAGGACATTCATTCGGAC 71992 ||||| | ||| ||||| |||||||| ||| | || ||| ||||| |||| || Sbjct 25738443 ATATAGTTTTTCAAACTCCTCTCCCCA-GCAGTCATGAAGTCCTGGACACTCATGGGGGT 25738385 Query 71993 ACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAA 72052 ||| || | ||| ||||| | | | | ||| || |||||||| |||||||||||||| | Sbjct 25738384 CCATTAACGTCCATTCTCCGTTACCTTCTACACGCTTCATAAATAGATCAGGAATCCACA 25738325 Query 72053 GAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 72112 || || ||||| | | || |||||||| ||||| ||||| || || || | Sbjct 25738324 TGGCGTAGAACAGATCGCGAGCTCGCTGCTCCTCTTTTCCAGTATTTTTCTTGCAGTCCA 25738265 Query 72113 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 72167 ||| | || || | ||||| || || | ||| ||||| | | |||| || Sbjct 25738264 AGAATTGGAATATGTCTGGGTGCCAGGGCTCTAGGTAGATGGCAAAAGCTCCTGG 25738210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671096926619640