Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq9 116 4e-21 >seq9 Length=97764462 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||||| | ||| ||||| | || || ||||| || |||||||||||| | Sbjct 51006817 CCTCCTCTCAAACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCGGAC 51006758 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| || ||||| || ||| |||||| ||| |||||||| || || Sbjct 51006757 AGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGGGGG 51006698 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||||| || | | ||| | ||||| | ||| || ||| Sbjct 51006697 ATTCCCTCTTTGTCCTGGATTTTAGCCTTAACATTTTCGATAGTGTCTGAGGGCTCAACT 51006638 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | || ||||| || | ||||| ||||| || ||||| Sbjct 51006637 TCAAGTGTGATTGTTTTGCCAGTGAGAGTTTTCACGAAGATCTGCAT 51006591 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || ||||| || |||||||||||| || |||| ||||| || ||||| || Sbjct 51007015 GTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAAGCTGTTTTCCG 51006956 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| ||| |||||||| || || || || |||||||| ||||| || Sbjct 51006955 GCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTA 51006896 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||||| | ||| || ||||||| || | || ||||| || | ||| Sbjct 51006895 ACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGTGAGAGTT 51006836 Query 143168 TTTACGAATATTTGCAT 143184 || || ||||| ||||| Sbjct 51006835 TTGACAAATATCTGCAT 51006819 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||||| | || || |||| || || || || ||||||||||| |||||| Sbjct 51002208 CCCCCTCTCAAACGGAGTACCAAGTGAAGCGTGGACTCCTTCTGTATGTTGTAGTCGCTC 51002149 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | | ||| || |||||||| || || ||| |||||| |||||| || || | ||| Sbjct 51002148 AGTATGCGGTGATCCTCGAGTTGCTTCCCGGCAAAGATCAAACGTTGTTGGTCAAGGGGT 51002089 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || ||||| || || || | ||| | | ||| | |||| | ||||| Sbjct 51002088 ATTCCCTCTTTTTCAAGGATCTTCTTTTTAACATTTTCGATACTGTCATCGCCCTCTACA 51002029 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | | ||| | ||||| || || | ||| || ||||| |||||||| Sbjct 51002028 TTTAAAGTAATTGTCTTTCCTGTAAGTGTCTTCACGAAGATTTGCAT 51001982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506982464430480