Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 5e-15 seq1597 91.5 2e-13 >seq1 Length=104615532 Score = 96.9 bits (106), Expect = 5e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 125367 aaaaaGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGA 125426 || ||||| | |||| ||| ||||||| |||||| | ||| | |||| || || Sbjct 19031699 AAGAAGGCCGACTGGGCTATTAAATGGATCGGTGACGAGGAATCTACTTACGGAGAGCGA 19031758 Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 | || | || || |||||||| || |||||||| || |||||||| ||||| || Sbjct 19031759 GTTGTTGGCTTTGCTGCCGTAGAAGGAATCTTCTTCAGTGGAAGTTTTGCCGCCATATTC 19031818 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTAT 125539 |||||||||||| | || ||||||| ||||| || |||||| || |||| Sbjct 19031819 TGGCTCAAGAAGAGGGGGATCATGCCTGGACTTACATTCAGTAATGAACTTAT 19031871 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/206 (71%), Gaps = 9/206 (4%) Strand=Plus/Plus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||||||| ||||||||| || ||| |||||||||| ||||| |||| || || ||| Sbjct 19030964 TTTCCCATCCAGTATCATGATATATGGCAAATGTACAAGAAGGCAGAGGCATCGTTCTGG 19031023 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | ||| || || ||| | ||||||||| || | ||||| | || ||| ||| Sbjct 19031024 ACAGCCGAGGAAGTTGATTTATCCAAGGACTTGCCACACTGGGAAAATC---TGAA-GAA 19031079 Query 125118 --ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 || ||| || | || || || || | | ||||||||||| | | || ||||| | Sbjct 19031080 GGAC-GAGAGACATTTCATCTCTCATGTGCTAGCCTTCTTTGCTGCCAGTGACGGAATAG 19031138 Query 125176 TCAACGACAATCTG--TTGACACGAT 125199 | ||||| || ||| |||||| || Sbjct 19031139 TTAACGAAAACCTGGTATGACACAAT 19031164 >seq1597 Length=274804 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/194 (72%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 || |||||| ||||||||| || ||| |||||||||| ||||| |||| || || ||| Sbjct 212093 TTCCCCATCCAGTATCATGATATATGGCAAATGTACAAGAAGGCGGAGGCATCGTTCTGG 212034 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | ||| || || ||| | ||||||||| || | ||||| | || ||| ||| Sbjct 212033 ACAGCCGAGGAAGTTGATTTATCCAAGGACTTGCCACACTGGGAAAATC---TGAA-GAA 211978 Query 125118 --ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 || ||| || | || || || ||| | | ||||||||||| | |||||||| | Sbjct 211977 GGAC-GAGAGACATTTCATCTCTCACGTGCTAGCCTTCTTTGCTGCTAGTGATGGAATAG 211919 Query 125176 TCAACGACAATCTG 125189 | ||||| || ||| Sbjct 211918 TTAACGAAAACCTG 211905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741012522533640