Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq9 105 5e-18 >seq9 Length=97764462 Score = 105 bits (116), Expect = 5e-18 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| | | || || ||||| ||||| || || ||||||||||| ||||| Sbjct 51002208 CCCCCTCTCAAACGGAGTACCAAGTGAAGCGTGGACTCCTTCTGTATGTTGTAGTCGCTC 51002149 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || || | || || | ||| || || || | ||||||||||||||||| || Sbjct 51002148 AGTATGCGGTGATCCTCGAGTTGCTTCCCGGCAAAGATCAAACGTTGTTGGTCAAGGGGT 51002089 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTA---TGGTATCGCTATTTTCT 15313 ||||| ||||| ||| || || | || ||| |||| | || ||||| ||| Sbjct 51002088 ATTCCCTCTTTTTCAAGGATCTTCTTTTTAACATTTTCGATACTGTCATCGC---CCTCT 51002032 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| ||| ||||| || || ||||| || || || || || |||||||| Sbjct 51002031 ACATTTAAAGTAATTGTCTTTCCTGTAAGTGTCTTCACGAAGATTTGCAT 51001982 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 || || || || || || |||||||||||||| ||| |||| | || || |||| | Sbjct 51001962 ACCAAGTGGAGAGTTGACTCTTTTTGTATGTTATAA--GCTTTCAGTTGCCGATCGTCCT 51001905 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 | | ||||| || || | ||||| ||||| || || ||| ||||| || ||||| Sbjct 51001904 CGAGCTGTTTCCCGGCAAAAATCAAGCGTTGCTGATCAGGTGGTATTCCCTCCTTGTCTT 51001845 Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||| || | || || | |||||| |||| | |||||||||| || ||||||| Sbjct 51001844 GAATCTTCTTTTTCACGTTCTCTATGCTATCATCTTCATCTACATCTAGAGTGATGGTTT 51001785 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| || || ||||| ||||| || ||||| Sbjct 51001784 TACCAGTGAGTGTTTTCACAAAGATCTGCAT 51001754 Score = 95.1 bits (104), Expect = 9e-15 Identities = 165/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| | | ||| ||||| || ||||| ||||| || |||||||||||| Sbjct 51006817 CCTCCTCTCAAACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCGGAC 51006758 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | ||||| || || | |||||||| || || || || Sbjct 51006757 AGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGGGGG 51006698 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| |||||||| ||||| ||| ||| |||| || || || || || Sbjct 51006697 ATTCCCTCTTTGTCCTGGATTTTAGCCTTAACATTTTCGATAGTGTCTGAGGGCTCAACT 51006638 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT--ATTTGAAAAT 15373 || | || || ||||| || || |||||||| || || || ||||| | ||||||| Sbjct 51006637 TCAAGTGTGATTGTTTTGCCAGTGAGAGTTTTCACGAAGATCTGCATGGTTCTGAAAAT 51006579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362156957556699