Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1597 102 7e-17 seq1 102 7e-17 >seq1597 Length=274804 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttt 13599 ||||||||||||||| || |||||||||||||| || || || | ||| || || | Sbjct 211908 GTTTTCGTTAACTATTCCATCACTAGCAGCAAAGAAGGCTAGCACGTGAGAGATGAAATG 211967 Query 13600 tttttCGT-TTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCT 13658 | | |||| |||| || ||| ||| | ||| || || || |||||||| || |||| Sbjct 211968 TCTCTCGTCCTTCT-TCAGATTTTCCCAGTGTGGCAAGTCCTTGGATAAATCAACTTCCT 212026 Query 13659 CAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAA 13718 | | ||||| || || || | |||||||| ||||| ||||||||| | ||| | Sbjct 212027 CGGCTGTCCAGAACGATGCCTCCGCCTTCTTGTACATTTGCCATATATCATGATACTGGA 212086 Query 13719 TGGGAAACACAAC 13731 |||| || ||||| Sbjct 212087 TGGGGAATACAAC 212099 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 |||| |||||| ||||||||||| |||||||| ||||| | ||||||||||||||| Sbjct 210630 AACAGTCTGTCGGCAACAAACTCAATGTACTGCTTCATCAGGGTACAGTTCATTCCTATG 210689 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 | ||||| || | ||||| || | || | || ||| || ||||| ||| | | | Sbjct 210690 AGGTTTACTGGGAGTGCTTCCGTGAGGAATTCTTGTTCAATTCTTACTGCCTCGCTGATT 210749 Query 13097 ATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT----AGATGCTTAAACATCATACA 13152 ||| || | |||| ||| |||| ||| | ||||| || ||||||| ||| Sbjct 210750 ATGGAATGTA-TGCGTT-TCT--GTGAGGGCTTGTTCACAAGATGGTTGAACATCAAACA 210805 Query 13153 TGCAAAATCACAGTG 13167 ||||||||||| || Sbjct 210806 GGCAAAATCACAATG 210820 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 || ||||| || ||||| | || |||||||||||||| || || ||||| || |||||| Sbjct 211561 ATGTAAGTGTCAATCAAAAGACTGTACATTTCTGAATGGATGTTCTCCATGGCAATTTGG 211620 Query 13481 AAACCATAAAAACATCTAGCCTC 13503 || |||||||||||||| || || Sbjct 211621 AATCCATAAAAACATCTTGCTTC 211643 >seq1 Length=104615532 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttt 13599 ||||||||||||||| |||||||| |||||||| || || || | || || || | Sbjct 19031149 GTTTTCGTTAACTATTCCGTCACTGGCAGCAAAGAAGGCTAGCACATGAGAGATGAAATG 19031090 Query 13600 tttttCGT-TTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCT 13658 | | |||| |||| || ||| ||| | ||| || || || |||||||| || |||| Sbjct 19031089 TCTCTCGTCCTTCT-TCAGATTTTCCCAGTGTGGCAAGTCCTTGGATAAATCAACTTCCT 19031031 Query 13659 CAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAA 13718 | | ||||| || || || | |||||||| ||||| ||||||||| | ||| | Sbjct 19031030 CGGCTGTCCAGAACGATGCCTCTGCCTTCTTGTACATTTGCCATATATCATGATACTGGA 19030971 Query 13719 TGGGAAACACAAC 13731 ||||||| ||||| Sbjct 19030970 TGGGAAATACAAC 19030958 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 || ||||| || ||||| | || |||||||||||||| || || ||||| || |||||| Sbjct 19031500 ATGTAAGTGTCAATCAAAAGACTGTACATTTCTGAATGGATGTTCTCCATGGCAATTTGG 19031441 Query 13481 AAACCATAAAAACATCTAGCCTC 13503 || |||||||||||||| || || Sbjct 19031440 AATCCATAAAAACATCTTGCTTC 19031418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430955932158678