Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq9 132 1e-25 seq8 93.3 1e-13 seq4 89.7 1e-12 seq1597 87.8 4e-12 seq1 87.8 4e-12 >seq9 Length=97764462 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || || || || ||||| | || ||||| || |||||||| Sbjct 51007015 GTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAAGCTGTTTTCCG 51006956 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||| ||||| || || ||||| ||||| ||||| || || || || Sbjct 51006955 GCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTA 51006896 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || || || || || || ||||| || || || ||||| || ||| Sbjct 51006895 ACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGTGAGAGTT 51006836 Query 104543 TTTACAAATATCTGCATT 104560 || ||||||||||||||| Sbjct 51006835 TTGACAAATATCTGCATT 51006818 >seq8 Length=26790906 Score = 93.3 bits (102), Expect = 1e-13 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||||||||| || |||||||||||||| || || ||||| || || || |||||||||| Sbjct 18129523 CTTTCTGAATGTTGTAGTCAGATAGAGTCCTTCCATCTTCAAGCTGCTTGCCAGCAAAAA 18129464 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 | | |||||||||||| || || || ||| Sbjct 18129463 TCAACCTCTGTTGATCTGGGGGGATACCT 18129435 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 |||||||||||||| || || || || |||||||||| ||||| ||||| ||||| Sbjct 18129018 CCTTCTTTATCCTGTATTTTGGCCTTGACATTTTCTATAGTATCAGAGGGTTCCACCTCC 18128959 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | || || ||||| || || | ||| || ||||| |||||||||||| Sbjct 18128958 AAGGTGATGGTCTTCCCGGTCAATGTCTTCACAAAGATCTGCATTTTG 18128911 >seq4 Length=56899080 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 165118 TTGGAATAAAATACACGATCCTGTTTTACATATAGAGCTAAGAAGATGGGCAGATATGAT 165177 |||||| |||| ||||| ||| | ||||||||| | ||||||||||| ||| | || Sbjct 7764971 TTGGAAGCAAATGAGTGATCCAGTTCTTCATATAGAGTTGAGAAGATGGGCCGATTTAAT 7764912 Query 165178 GTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAGATAGCTAACGGTATCTGTAATAA 165237 ||||||||| ||||| || || | ||| || || ||||| || || || ||| |||| Sbjct 7764911 GTTGATAGCTCCCTTGGATGCCAATACTTTGGCTAAAATAGCAAATGGAATATGTGATAA 7764852 Query 165238 CTTG 165241 |||| Sbjct 7764851 CTTG 7764848 >seq1597 Length=274804 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762 ||||| |||| || || ||| || |||||||||| |||||||| |||| | || Sbjct 212102 TTTGTTGTATTCCCCATCCAGTATCATGATATATGGCAAATGTACAAGAAGGCGGAGGCA 212043 Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTA 268822 || || ||||| | || ||||| ||| | || | ||||| | | ||| ||||| | Sbjct 212042 TCGTTCTGGACAGCCGAGGAAGTTGATTTATCCAAGGACTTGCCACACTGGGAAAATCTG 211983 Query 268823 AAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGT 268882 || || || ||| || || ||| | | || || || ||||| | ||||||||| Sbjct 211982 AAGAAGGACGAGAGACATTTCATCTCTCACGTGCTAGCCTTCTTTGCTGCTAGTGATGGA 211923 Query 268883 ATCGTTAACGAAAATCTAGTA 268903 || ||||||||||| || ||| Sbjct 211922 ATAGTTAACGAAAACCTGGTA 211902 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 268932 CTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGT 268991 ||||||| ||||||||||| |||||||| || || || || || || |||||||| |||| Sbjct 211645 CTGAAGCAAGATGTTTTTATGGATTCCAAATTGCCATGGAGAACATCCATTCAGAAATGT 211586 Query 268992 ACAGTCTATTAATAGATACTTATAT 269016 ||||||| || || || ||||| || Sbjct 211585 ACAGTCTTTTGATTGACACTTACAT 211561 >seq1 Length=104615532 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762 ||||| ||||||| || ||| || |||||||||| |||||||| |||| | || Sbjct 19030955 TTTGTTGTATTTCCCATCCAGTATCATGATATATGGCAAATGTACAAGAAGGCAGAGGCA 19031014 Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTA 268822 || || ||||| | || ||||| ||| | || | ||||| | | ||| ||||| | Sbjct 19031015 TCGTTCTGGACAGCCGAGGAAGTTGATTTATCCAAGGACTTGCCACACTGGGAAAATCTG 19031074 Query 268823 AAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGT 268882 || || || ||| || || ||| || | || || || ||||| | ||||| || Sbjct 19031075 AAGAAGGACGAGAGACATTTCATCTCTCATGTGCTAGCCTTCTTTGCTGCCAGTGACGGA 19031134 Query 268883 ATCGTTAACGAAAATCTAGTA 268903 || ||||||||||| || ||| Sbjct 19031135 ATAGTTAACGAAAACCTGGTA 19031155 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 268932 CTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGT 268991 ||||||| ||||||||||| |||||||| || || || || || || |||||||| |||| Sbjct 19031416 CTGAAGCAAGATGTTTTTATGGATTCCAAATTGCCATGGAGAACATCCATTCAGAAATGT 19031475 Query 268992 ACAGTCTATTAATAGATACTTATAT 269016 ||||||| || || || ||||| || Sbjct 19031476 ACAGTCTTTTGATTGACACTTACAT 19031500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151324063200612