Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2121 118 2e-22 seq529 118 2e-22 seq4 113 7e-21 >seq2121 Length=81720 Score = 118 bits (130), Expect = 2e-22 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||| ||||| |||||||||||||| ||||| | ||||| || Sbjct 11312 GATAACATCCAGGGTATCACAAAGCCCGCTATCCGTCGTCTCGCTCGCAGAGGTGGTGTA 11371 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 || ||| |||| || | |||| || || | | | ||| | || | ||| | | Sbjct 11372 AAACGTATCTCCGGTCTCATCTACGAGGAAACCAGAGGTGTACTCAAAGTTTTCTTGGAA 11431 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| ||||||| || || || ||||| || || | ||||| ||||| || Sbjct 11432 AATGTCATCCGTGATGCTGTCACATACACTGAGCATGCCAAGAGGAAGACAGTCACAGCC 11491 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| |||||||||| | || | || || |||| | || || || ||| ||||| Sbjct 11492 ATGGATGTCGTCTATGCTCTCAAGAGACAGGGACGTACTCTCTACGGATTCGGAGGTTAA 11551 Score = 118 bits (130), Expect = 2e-22 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||| ||||| |||||||||||||| ||||| | ||||| || Sbjct 19060 GATAACATCCAGGGTATCACAAAGCCCGCTATCCGTCGTCTCGCTCGCAGAGGTGGTGTA 19119 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 || ||| |||| || | |||| || || | | | ||| | || | ||| | | Sbjct 19120 AAACGTATCTCCGGTCTCATCTACGAGGAAACCAGAGGTGTACTCAAAGTTTTCTTGGAA 19179 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| ||||||| || || || ||||| || || | ||||| ||||| || Sbjct 19180 AATGTCATCCGTGATGCTGTCACATACACTGAGCATGCCAAGAGGAAGACAGTCACAGCC 19239 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| |||||||||| | || | || || |||| | || || || ||| ||||| Sbjct 19240 ATGGATGTCGTCTATGCTCTCAAGAGACAGGGACGTACTCTCTACGGATTCGGAGGTTAA 19299 Score = 118 bits (130), Expect = 2e-22 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||| ||||| |||||||||||||| ||||| | ||||| || Sbjct 25187 GATAACATCCAGGGTATCACAAAGCCCGCTATCCGTCGTCTCGCTCGCAGAGGTGGTGTA 25246 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 || ||| |||| || | |||| || || | | | ||| | || | ||| | | Sbjct 25247 AAACGTATCTCCGGTCTCATCTACGAGGAAACCAGAGGTGTACTCAAAGTTTTCTTGGAA 25306 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| ||||||| || || || ||||| || || | ||||| ||||| || Sbjct 25307 AATGTCATCCGTGATGCTGTCACATACACTGAGCATGCCAAGAGGAAGACAGTCACAGCC 25366 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| |||||||||| | || | || || |||| | || || || ||| ||||| Sbjct 25367 ATGGATGTCGTCTATGCTCTCAAGAGACAGGGACGTACTCTCTACGGATTCGGAGGTTAA 25426 Score = 118 bits (130), Expect = 2e-22 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||| ||||| |||||||||||||| ||||| | ||||| || Sbjct 31262 GATAACATCCAGGGTATCACAAAGCCCGCTATCCGTCGTCTCGCTCGCAGAGGTGGTGTA 31321 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 || ||| |||| || | |||| || || | | | ||| | || | ||| | | Sbjct 31322 AAACGTATCTCCGGTCTCATCTACGAGGAAACCAGAGGTGTACTCAAAGTTTTCTTGGAA 31381 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| ||||||| || || || ||||| || || | ||||| ||||| || Sbjct 31382 AATGTCATCCGTGATGCTGTCACATACACTGAGCATGCCAAGAGGAAGACAGTCACAGCC 31441 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| |||||||||| | || | || || |||| | || || || ||| ||||| Sbjct 31442 ATGGATGTCGTCTATGCTCTCAAGAGACAGGGACGTACTCTCTACGGATTCGGAGGTTAA 31501 Score = 118 bits (130), Expect = 2e-22 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||| ||||| |||||||||||||| ||||| | ||||| || Sbjct 37435 GATAACATCCAGGGTATCACAAAGCCCGCTATCCGTCGTCTCGCTCGCAGAGGTGGTGTA 37494 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 || ||| |||| || | |||| || || | | | ||| | || | ||| | | Sbjct 37495 AAACGTATCTCCGGTCTCATCTACGAGGAAACCAGAGGTGTACTCAAAGTTTTCTTGGAA 37554 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| ||||||| || || || ||||| || || | ||||| ||||| || Sbjct 37555 AATGTCATCCGTGATGCTGTCACATACACTGAGCATGCCAAGAGGAAGACAGTCACAGCC 37614 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| |||||||||| | || | || || |||| | || || || ||| ||||| Sbjct 37615 ATGGATGTCGTCTATGCTCTCAAGAGACAGGGACGTACTCTCTACGGATTCGGAGGTTAA 37674 Score = 118 bits (130), Expect = 2e-22 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||| ||||| |||||||||||||| ||||| | ||||| || Sbjct 43611 GATAACATCCAGGGTATCACAAAGCCCGCTATCCGTCGTCTCGCTCGCAGAGGTGGTGTA 43670 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 || ||| |||| || | |||| || || | | | ||| | || | ||| | | Sbjct 43671 AAACGTATCTCCGGTCTCATCTACGAGGAAACCAGAGGTGTACTCAAAGTTTTCTTGGAA 43730 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| ||||||| || || || ||||| || || | ||||| ||||| || Sbjct 43731 AATGTCATCCGTGATGCTGTCACATACACTGAGCATGCCAAGAGGAAGACAGTCACAGCC 43790 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| |||||||||| | || | || || |||| | || || || ||| ||||| Sbjct 43791 ATGGATGTCGTCTATGCTCTCAAGAGACAGGGACGTACTCTCTACGGATTCGGAGGTTAA 43850 Score = 118 bits (130), Expect = 2e-22 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||| ||||| |||||||||||||| ||||| | ||||| || Sbjct 49725 GATAACATCCAGGGTATCACAAAGCCCGCTATCCGTCGTCTCGCTCGCAGAGGTGGTGTA 49784 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 || ||| |||| || | |||| || || | | | ||| | || | ||| | | Sbjct 49785 AAACGTATCTCCGGTCTCATCTACGAGGAAACCAGAGGTGTACTCAAAGTTTTCTTGGAA 49844 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| ||||||| || || || ||||| || || | ||||| ||||| || Sbjct 49845 AATGTCATCCGTGATGCTGTCACATACACTGAGCATGCCAAGAGGAAGACAGTCACAGCC 49904 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| |||||||||| | || | || || |||| | || || || ||| ||||| Sbjct 49905 ATGGATGTCGTCTATGCTCTCAAGAGACAGGGACGTACTCTCTACGGATTCGGAGGTTAA 49964 Score = 113 bits (124), Expect = 7e-21 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||| ||||| |||||||||||||| ||||| | ||||| || Sbjct 55859 GATAACATCCAGGGTATCACAAAGCCCGCTATCCGTCGTCTCGCTCGCAGAGGTGGTGTA 55918 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 || ||| |||| || | |||| || || | | | ||| | || | ||| | | Sbjct 55919 AAACGTATCTCCGGTCTCATCTACGAGGAAACCAGAGGTGTACTCAAAGTTTTCTTGGAA 55978 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| |||||| || || || ||||| || || | ||||| ||||| || Sbjct 55979 AATGTCATCCGTGATGCAGTCACATACACTGAGCATGCCAAGAGGAAGACAGTCACAGCC 56038 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| |||||||||| | || | || || |||| | || || || ||| ||||| Sbjct 56039 ATGGATGTCGTCTATGCTCTCAAGAGACAGGGACGTACTCTCTACGGATTCGGAGGTTAA 56098 Score = 113 bits (124), Expect = 7e-21 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||| ||||| |||||||||||||| ||||| | ||||| || Sbjct 61906 GATAACATCCAGGGTATCACAAAGCCCGCTATCCGTCGTCTCGCTCGCAGAGGTGGTGTA 61965 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 || ||| |||| || | |||| || || | | | ||| | || | ||| | | Sbjct 61966 AAACGTATCTCCGGTCTCATCTACGAGGAAACCAGAGGTGTACTCAAAGTTTTCTTGGAA 62025 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| |||||| || || || ||||| || || | ||||| ||||| || Sbjct 62026 AATGTCATCCGTGATGCAGTCACATACACTGAGCATGCCAAGAGGAAGACAGTCACAGCC 62085 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| |||||||||| | || | || || |||| | || || || ||| ||||| Sbjct 62086 ATGGATGTCGTCTATGCTCTCAAGAGACAGGGACGTACTCTCTACGGATTCGGAGGTTAA 62145 >seq529 Length=255643 Score = 118 bits (130), Expect = 2e-22 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||| ||||| |||||||||||||| ||||| | ||||| || Sbjct 243679 GATAACATCCAGGGTATCACAAAGCCCGCTATCCGTCGTCTCGCTCGCAGAGGTGGTGTG 243738 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 || ||| |||| || | |||| || || | | | ||| |||| | ||| | | Sbjct 243739 AAACGTATCTCGGGTCTCATCTACGAGGAAACCAGAGGTGTACTGAAAGTTTTCTTGGAA 243798 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| |||||| || || || ||||| || || | ||||| ||||| || Sbjct 243799 AATGTCATCCGTGATGCAGTCACATACACTGAGCATGCCAAGAGGAAGACAGTCACAGCC 243858 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| |||||||||| | || | || || |||| | || || || ||| ||||| Sbjct 243859 ATGGATGTCGTCTATGCTCTCAAGAGACAGGGACGTACTCTCTACGGATTCGGAGGTTAA 243918 >seq4 Length=56899080 Score = 113 bits (124), Expect = 7e-21 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||| ||||| |||||||||||||| ||||| | ||||| || Sbjct 48915582 GATAACATCCAGGGTATCACAAAGCCCGCTATCCGTCGTCTCGCTCGCAGAGGTGGTGTG 48915641 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 || ||| |||| || | |||| || || | | | ||| |||| | ||| | | Sbjct 48915642 AAACGTATCTCCGGTCTCATCTACGAGGAAACCAGAGGTGTACTGAAAGTTTTCTTGGAA 48915701 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| |||||| || || || ||||| || || | ||||| ||||| || Sbjct 48915702 AATGTCATCCGTGATGCAGTCACGTACACTGAGCATGCCAAGAGGAAGACAGTCACAGCC 48915761 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| |||||||||| | || | | || |||| | || || || ||| ||||| Sbjct 48915762 ATGGATGTCGTCTATGCTCTCAAGAGACGGGGACGTACTCTCTACGGATTCGGAGGTTAA 48915821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070592807027