Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq8 84.2 4e-12 seq9 82.4 1e-11 >seq8 Length=26790906 Score = 84.2 bits (92), Expect = 4e-12 Identities = 160/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 4471 GATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGAT----TTAGG 4526 || ||||| ||||||||| | || || | |||| | |||| |||| || ||||| Sbjct 16364955 GACAAAAAGAATTATGTTGTGCATTACACAAATCTAAAAC----TTTACATGAAATTAGG 16365010 Query 4527 TTTAGTTCTTAAGAAAATACACCTAGTCT--TGAAATTTGAGCAATCAGACTGGCTCAAA 4584 ||| || | ||||| || ||| | | ||| ||| |||||| |||||| ||| Sbjct 16365011 GTTAAAACTGACAAAAATTCA--TAGGATACTAGAATCTGAACAATCACCCTGGCTTAAA 16365068 Query 4585 TCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaC 4644 |||| ||||| || ||| | || | | | || || || | || ||||| | Sbjct 16365069 CCATACATCGACTTTAACACCAAACAACGGACATTGGCAAAAAACAAATTTGAAAAGAGT 16365128 Query 4645 TTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACG 4697 || | |||| | ||||||||| ||||||||||||| || ||||| ||||| || Sbjct 16365129 TTCTTTAAACTCATGAATAATTCGGTTTTTGGAAAAACCATGGAAAATGTCCG 16365181 >seq9 Length=97764462 Score = 82.4 bits (90), Expect = 1e-11 Identities = 123/170 (72%), Gaps = 10/170 (6%) Strand=Plus/Minus Query 4537 AAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGA----CTGGCTCAAATCATATAT 4592 |||||||| |||| || |||| ||| ||| |||| |||| | ||| | || || Sbjct 96379748 AAGAAAATTCACCGGGTGTTGAGATTC---CAA-CAGAGTCCCTGGTTGAAACCCTACAT 96379693 Query 4593 CGATAAAAATACCG-CATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATA 4651 ||| |||||| ||||| |||| ||| || ||||| || ||||| ||||||||| Sbjct 96379692 CGACTTCAATACCAACATGCGGAAAGA-AGCCAAAAATGAATTTGAAAAGGACTTTTATA 96379634 Query 4652 AATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAA 4701 | | |||||||| | || ||||| || |||||||||||| | ||||| Sbjct 96379633 AGCTCATGAATAACTCCGTATTTGGCAAAACGATGGAGAATTTGAGAAAA 96379584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97968537395606