Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-19 >seq3 Length=91555047 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 16706 TACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCG 16765 || |||||||| || | ||||| | ||| || ||||||||||| || ||||| ||||| Sbjct 54869529 TAACCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCT 54869470 Query 16766 GCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACA 16825 | || ||| | |||||||||| ||||| || ||| | || | | ||||||||| Sbjct 54869469 GACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGG 54869410 Query 16826 GGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 || | ||||| || || || || || ||| || | | | ||||| ||| | Sbjct 54869409 GGAATTCCCTCCTTATCCTGGATCTTGGC--CTTGACATTCTCAATGGTGTCAGAGGGTT 54869352 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| ||||||||| || || ||||| || || |||||||||||||| Sbjct 54869351 CTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54869300 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 16706 TACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCG 16765 || |||||||| || | ||||| | ||| || ||||||||||| || ||||| ||||| Sbjct 54870858 TAACCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCT 54870799 Query 16766 GCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACA 16825 | || ||| | |||||||||| ||||| || ||| | || | | ||||||||| Sbjct 54870798 GACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGG 54870739 Query 16826 GGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 || | ||||| || || || || || ||| || | | | ||||| ||| | Sbjct 54870738 GGAATTCCCTCCTTATCCTGGATCTTGGC--CTTGACATTCTCAATGGTGTCAGAGGGTT 54870681 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| ||||||||| || || ||||| || || |||||||||||||| Sbjct 54870680 CTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54870629 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 16706 TACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCG 16765 || |||||||| || | ||||| | ||| || ||||||||||| || ||||| ||||| Sbjct 54872364 TAACCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGAATGTTATAGTCT 54872305 Query 16766 GCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACA 16825 | || ||| | |||||||||| ||||| || ||| | || | | ||||||||| Sbjct 54872304 GACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGG 54872245 Query 16826 GGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 || | ||||| || || || || || ||| || | | | ||||| ||| | Sbjct 54872244 GGAATTCCCTCCTTATCCTGGATCTTGGC--CTTGACATTCTCAATGGTGTCAGAGGGTT 54872187 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| ||||||||| || || ||||| || || |||||||||||||| Sbjct 54872186 CTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54872135 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 16706 TACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCG 16765 || |||||||| || | ||||| | ||| || ||||||||||| || ||||| ||||| Sbjct 54872725 TAACCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCT 54872666 Query 16766 GCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACA 16825 | || ||| | |||||||||| ||||| || ||| | || | | ||||||||| Sbjct 54872665 GACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGG 54872606 Query 16826 GGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 || | ||||| || || || || || ||| || | | | ||||| ||| | Sbjct 54872605 GGAATTCCCTCCTTATCCTGGATCTTGGC--CTTGACATTCTCAATGGTGTCAGAGGGTT 54872548 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| ||||||||| || || ||||| || || |||||||||||||| Sbjct 54872547 CTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54872496 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 16706 TACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCG 16765 || |||||||| || | ||||| | ||| || ||||||||||| || ||||| ||||| Sbjct 54870503 TAACCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCT 54870444 Query 16766 GCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACA 16825 | || ||| | |||||||||| ||||| || ||| | || | | ||||||||| Sbjct 54870443 GACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGG 54870384 Query 16826 GGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 || | ||||| || || || || || ||| || | | | ||||| ||| | Sbjct 54870383 GGAATTCCCTCCTTATCCTGGATCTTGGC--CTTGACATTCTCAATGGTGTCAGAGGGTT 54870326 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| |||||||| || || ||||| || || |||||||||||||| Sbjct 54870325 CTACTTCCAACGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54870274 Score = 107 bits (118), Expect = 2e-18 Identities = 168/238 (71%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 16703 ATTTAC---CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTG 16759 |||||| ||||||| || | ||||| | ||| || ||||||||||| || ||||| Sbjct 54873302 ATTTACAGTCCTCCTCTGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTA 54873243 Query 16760 TAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGG 16819 ||||| | || ||| | |||||||||| ||||| || ||| | || | | ||||||| Sbjct 54873242 TAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGG 54873183 Query 16820 TCCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGC 16877 || || | ||||| || || || || || ||| || | | | ||||| Sbjct 54873182 TCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGC--CTTGACATTCTCAATGGTGTCAG 54873125 Query 16878 CGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| || ||||| ||||||||| || || ||||| || || |||||||||||||| Sbjct 54873124 AGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54873067 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/195 (70%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 16743 ACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCAT 16802 ||||||| || ||||| ||||| | || ||| | |||||||||| ||||| || ||| Sbjct 54872127 ACTCCTTCTGAATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAA 54872068 Query 16803 AAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCAC 16860 | || | | ||||||||| || | ||||| || || || || || ||| || Sbjct 54872067 AGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGC--CTTGAC 54872010 Query 16861 CTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTT 16920 | | | ||||| ||| || ||||| ||||||||| || || ||||| || || Sbjct 54872009 ATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTT 54871950 Query 16921 GACAAAAATCTGCAT 16935 |||||||||||||| Sbjct 54871949 CACAAAAATCTGCAT 54871935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405063122406610