Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq14 140 2e-28 seq10 140 2e-28 seq9 138 8e-28 seq657 131 1e-25 seq12 91.5 1e-13 seq2 84.2 1e-11 >seq14 Length=46529346 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 11795196 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 11795255 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 11795256 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 11795290 >seq10 Length=87592839 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 11833395 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 11833336 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 11833335 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 11833301 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 11831138 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTCCGCTATCGGACTCGT 11831079 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 11831078 GCCAGTATTTAGCCTTA 11831062 >seq9 Length=97764462 Score = 138 bits (152), Expect = 8e-28 Identities = 173/236 (73%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||||||||| | |||||||| |||||| ||| || || || ||||||| Sbjct 51006821 CATT-CCTCCTCTCAAACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAAT 51006763 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | |||| | || | || || | |||||||||||||| || | || || ||||| | Sbjct 51006762 CGGACAGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTG 51006703 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||||| || ||||||||| ||||| ||| ||||| | || ||| ||| | Sbjct 51006702 GGGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTAACATTTTCGATAGTGTCTGAGGGCT 51006643 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 ||||||| | ||| || ||||| || || | ||||||||||| ||||||||| || Sbjct 51006642 CAACTTCAAGTGTGATTGTTTTGCCAGTGAGAGTTTTCACGAAGATCTGCATGGTT 51006587 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 39109930 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTCCGCTATCGGACTCGT 39109989 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 39109990 GCCAGTATTTAGCCTTA 39110006 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 ||| || || || |||||||| |||| | || | || || | |||||||||||||| Sbjct 51007010 CTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCAAA 51006951 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || | || || ||||| | ||||| || ||||||||| ||||| ||| ||||| Sbjct 51006950 GATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTAACATT 51006891 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | || ||| ||| |||||||| | ||| || ||||| || || | ||||| || Sbjct 51006890 TTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGTGAGAGTTTTGAC 51006831 Query 38306 GAATATCTGCAT 38317 ||||||||||| Sbjct 51006830 AAATATCTGCAT 51006819 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| ||||||||||| | ||||| ||||| ||| |||||| || || ||||| || Sbjct 51002209 ACCCCCTCTCAAACGGAGTACCAAGTGAAGCGTGGACTCCTTCTGTATGTTGTAGTCGCT 51002150 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | || | || || | ||| || |||||||| || | |||||||| || ||| Sbjct 51002149 CAGTATGCGGTGATCCTCGAGTTGCTTCCCGGCAAAGATCAAACGTTGTTGGTCAAGGGG 51002090 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | || ||||| || | || || | || ||||| | || | | || | | || || Sbjct 51002089 TATTCCCTCTTTTTCAAGGATCTTCTTTTTAACATTTTCGATACTGTCATCGCCCTCTAC 51002030 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||| ||||| || || || || | || |||||||| || ||||| Sbjct 51002029 ATTTAAAGTAATTGTCTTTCCTGTAAGTGTCTTCACGAAGATTTGCAT 51001982 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| | || | ||||| |||||| || ||||||||| || || ||||| | Sbjct 51001752 CCTCCTCTGAGTCGGAGCACCAGATGAAGTGTAGACTCCTTTTGGATGTTATAATCCAGC 51001693 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || | || || ||||||||||| || |||||||||| | || || || ||| Sbjct 51001692 AAGGACCTATCATCCTCTAATTGTTTACCTGCAAATATTAATCTCTGCTGGTCTACAGGG 51001633 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| || ||||| ||||||| ||||| || | ||| || | ||||| Sbjct 51001632 ATTCCTTCCTTCTCCATGATTTTTTCTTTCACCTTTTTGACCTCCTCCGCGGCCTCAACG 51001573 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || || || || || || || |||||||| Sbjct 51001572 TCAATGGTGATCGTCTTTCCAGTTAAAGTCTTTACAAAGATCTGCAT 51001526 >seq657 Length=4699 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 2496 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 2555 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2556 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2590 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 4490 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 4549 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 4550 GCCCGTATTTAGCCTT 4565 >seq12 Length=48899472 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 19946 TCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||||||| ||||||||||||| ||||||||||||||| ||| |||||||| |||| Sbjct 16630031 TCTCTCTCTTGCAAGTTCTTTTCAAATTTCCCTCACGGTACGTGTCCGCTATCGAACTCG 16630090 Query 20006 CGGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 16630091 TGCCAGTATTTAGCCTTA 16630108 >seq2 Length=60074718 Score = 84.2 bits (92), Expect = 1e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || ||||| || || || |||||||| || || || |||||| ||||||||| Sbjct 24090518 CCTACCAAATACTTTGGATGTGAACTTGGTGCCCAAACAATGTTTGACTTTAAAAACGAG 24090577 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 ||||| ||||| ||||| || ||| || ||| || || || | ||||| || ||| Sbjct 24090578 CGCTTTATCGTAAACGGCTCTCATGACGCTGGTAAACTACAAAGTCTGCTTGATGGATTT 24090637 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 || || |||||| |||||| |||||| || || ||||| Sbjct 24090638 ATCAAAAAATTTGTGTTGTGTCCTGAATGCTCCAATCCAGAGAC 24090681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334926629950409