Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1 127 3e-24 seq1597 122 1e-22 seq5 87.8 2e-12 >seq1 Length=104615532 Score = 127 bits (140), Expect = 3e-24 Identities = 164/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| || || || || | ||| || || || ||||| ||||| | || | ||| | Sbjct 19031885 CCTCATCCCTGCTGATAAGTTCATTACTGAATGTAAGTCCAGGCATGATCCCCCTCTTCT 19031826 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||||| ||||| |||| ||||| ||||||||||| || |||||| Sbjct 19031825 TGAGCCAGAATATGGCGGCAAAACTTCCACTGAAGAAGATTCCTTCTACGGCAGCAAAGC 19031766 Query 32803 CAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGG 32859 ||| || || |||||| ||| | | |||| ||||| || |||||| |||| Sbjct 19031765 CAACAACTCGCTCTCCGTAAGTAGATTCCTCGTCACCGATCCATTTAATAGCCCAGTCGG 19031706 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 |||||||||| ||||| |||||||| || || ||||| || ||||| Sbjct 19031705 CCTTCTTTTTCACACAGGGCATTGTTTCAATGGCATTGAATAGATA 19031660 Score = 116 bits (128), Expect = 5e-21 Identities = 155/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 33048 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 33107 ||||| || ||||||||||||||||| ||||| || || | ||||| || |||| | Sbjct 19031148 TTTTCGTTAACTATTCCGTCACTGGCAGCAAAGAAGGCTAGCACATGAGAGATGAAATGT 19031089 Query 33108 TTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCC 33167 | ||||| | || || | ||| | | || || |||| ||| ||||| || Sbjct 19031088 CTCTCGTCCTTCTTCAGATTTTCCCAGTGTGGCAAGTCCTTGGATAAATCAACTTCCTCG 19031029 Query 33168 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATT 33227 ||||||| || |||||||||||||| || ||||| | ||| || |||||||| || || Sbjct 19031028 GCTGTCCAGAACGATGCCTCTGCCTTCTTGTACATTTGCCATATATCATGATACTGGATG 19030969 Query 33228 GGAAAAATAACAAATCTATTTGGATTTT-TTGCA 33260 ||||| | |||||| | |||| |||| ||||| Sbjct 19030968 GGAAATACAACAAAGCGCCTTGGGTTTTCTTGCA 19030935 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 32931 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 32990 || || |||||||||||||| |||||||| ||||| ||||| || ||||| ||||| ||| Sbjct 19031497 TAAGTGTCAATCAAAAGACTGTACATTTCTGAATGGATGTTCTCCATGGCAATTTGGAAT 19031438 Query 32991 CCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATC 33036 || || || ||||| || || || || |||||| | | ||||| Sbjct 19031437 CCATAAAAACATCTTGCTTCAGTGGATTGGACTTCTTTGCTAAATC 19031392 >seq1597 Length=274804 Score = 122 bits (134), Expect = 1e-22 Identities = 163/226 (72%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| || || || || | ||| || || || ||||| ||||| | || | ||| | Sbjct 211176 CCTCATCCCTGCTGATAAGTTCATTACTGAATGTAAGTCCAGGCATGATACCCCTCTTCT 211235 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||||| ||||| |||| ||||| ||||||||||| || |||||| Sbjct 211236 TCAGCCAGAATATGGCGGCAAAACTTCCACTGAAGAAGATTCCTTCTACGGCAGCAAAGC 211295 Query 32803 CAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGG 32859 ||| || || |||||| ||| | | |||| ||||| || |||||| |||| Sbjct 211296 CAACAACTCGCTCTCCGTAAGTAGATTCCTCGTCACCAATCCATTTAATAGCCCAGTCGG 211355 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 ||||||| || ||||| |||||||| || || ||||| || ||||| Sbjct 211356 CCTTCTTCTTCACACAGGGCATTGTTTCAATGGCATTGAATAGATA 211401 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 32931 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 32990 || || |||||||||||||| |||||||| ||||| ||||| || ||||| ||||| ||| Sbjct 211564 TAAGTGTCAATCAAAAGACTGTACATTTCTGAATGGATGTTCTCCATGGCAATTTGGAAT 211623 Query 32991 CCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATC 33036 || || || ||||| || || || || |||||| | | ||||| Sbjct 211624 CCATAAAAACATCTTGCTTCAGTGGATTGGACTTCTTTGCTAAATC 211669 >seq5 Length=54553330 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| |||| || ||||| || || ||||| || | || || ||||||||||| | Sbjct 25744981 TCCAGGCGTAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTAGGCTCGGCTATATGGATGT 25744922 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| ||| ||||| ||||| ||||| ||||| ||||| || |||||||| | | || | Sbjct 25744921 TCAGAGACTGACTCTGATCAATGAACGCTCCTCTGTCGGCTGCCATTTTGAGCACTGTTT 25744862 Query 62037 TTTGTGGAATTTCCCA 62052 | || | |||||||| Sbjct 25744861 TCTGGGAGATTTCCCA 25744846 Score = 86.0 bits (94), Expect = 8e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||| ||||| |||||||| | | ||||| ||||| |||| || ||| |||| Sbjct 25738434 TTCAAACTCCTCTCCCCAGCAGTCATGAAGTCCTGGACACTCATGGGGGTCCATTAACGT 25738375 Query 63052 CCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 63110 ||| ||||||| | ||||| || || |||||||| |||||||||||||| | || | Sbjct 25738374 CCATTCTCCGTTA-CCTTCTACACGCTTCATAAATAGATCAGGAATCCACATGGCGTAGA 25738316 Query 63111 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63170 | ||||| | | || || ||||| ||||| ||||| || || || | ||| | Sbjct 25738315 ACAGATCGCGAGCTCGCTGCTCCTCTTTTCCAGTATTTTTCTTGCAGTCCAAGAATTGGA 25738256 Query 63171 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63216 || || | ||||| || || | ||| ||||| | | |||| || Sbjct 25738255 ATATGTCTGGGTGCCAGGGCTCTAGGTAGATGGCAAAAGCTCCTGG 25738210 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 63221 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63280 || ||||| ||||| || | |||||||| ||||| ||||| ||||||| ||| |||| Sbjct 25737766 TTATTTCCGCCCTGGTCCACATATCTAGCTGTGTTGTTATATACTCTCAGCATGGGAAGT 25737707 Query 63281 ATACCATTGGATGTACCATTGGTC 63304 | |||||| ||||||||||||||| Sbjct 25737706 AAACCATTAGATGTACCATTGGTC 25737683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633592089104400