Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq9 138 1e-27 seq10 91.5 1e-13 seq2 84.2 2e-11 >seq9 Length=97764462 Score = 138 bits (152), Expect = 1e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| ||||| || || || || ||| | || || ||| | |||||| | ||||| ||| Sbjct 51006586 GAACCATGCAGATCTTCGTGAAAACTCTCACTGGCAAAACAATCACACTTGAAGTTGAGC 51006645 Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 | || ||||||||||| | ||| |||||| |||||||| || || || || | Sbjct 51006646 CCTCAGACACTATCGAAAATGTTAAGGCTAAAATCCAGGACAAAGAGGGAATCCCCCCAG 51006705 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||||| | || |||||||| ||||| | ||||||| |||||| || ||||| Sbjct 51006706 ATCAGCAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGATGGCCGCACTCTGTCCGATT 51006765 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||| || || ||||| ||||| || ||||| || || | | |||||||||| Sbjct 51006766 ACAACATCCAGAAAGAGTCCACTCTCCATTTGGTTCTTCGTTTGAGAGGAGGAA 51006819 Score = 129 bits (142), Expect = 5e-25 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| |||||||| || ||| | || || ||| | |||||| | ||||| ||| | || Sbjct 51006818 AATGCAGATATTTGTCAAAACTCTCACTGGCAAAACAATCACACTTGAAGTTGAGCCCTC 51006877 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | ||| |||||| |||||||| || || || || || || Sbjct 51006878 AGACACTATCGAAAATGTTAAGGCTAAAATCCAGGACAAAGAGGGAATCCCCCCAGATCA 51006937 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || |||||||| ||||| | ||||||| |||||| || ||||||||| Sbjct 51006938 GCAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGATGGCCGCACTCTGTCCGATTACAA 51006997 Query 25178 TATTCAAAAAGAATCCACG 25196 || || ||||| |||||| Sbjct 51006998 CATCCAGAAAGAGTCCACG 51007016 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||||||||| || |||||||||||||| || || || | ||||| | || || ||| Sbjct 51001521 GAACAATGCAGATCTTTGTAAAGACTTTAACTGGAAAGACGATCACCATTGACGTTGAGG 51001580 Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 | | || || | |||| ||||||||| || || ||||| || || | Sbjct 51001581 CCGCGGAGGAGGTCAAAAAGGTGAAAGAAAAAATCATGGAGAAGGAAGGAATCCCTGTAG 51001640 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||| ||| | | || ||||| || ||||||||||| |||||| | | || |||| Sbjct 51001641 ACCAGCAGAGATTAATATTTGCAGGTAAACAATTAGAGGATGATAGGTCCTTGCTGGATT 51001700 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || || ||||| || || || || ||| | ||||| | || |||||||| Sbjct 51001701 ATAACATCCAAAAGGAGTCTACACTTCATCTGGTGCTCCGACTCAGAGGAGG 51001752 >seq10 Length=87592839 Score = 91.5 bits (100), Expect = 1e-13 Identities = 120/161 (75%), Gaps = 9/161 (6%) Strand=Plus/Plus Query 50937 TTCTTGTTGCGA-ATTTTTAATTTTGTACTTGGCGATGTATAA--ATCCACGTTAAACTT 50993 ||| || | ||| ||||||| ||||||| || | | | || | |||||| |||||| Sbjct 56461671 TTCATGGTCCGATATTTTTATTTTTGTATTT--CCTTTCAAAAGCAGCCACGTCAAACTT 56461728 Query 50994 ACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTCTTTGAA 51053 | |||||||||| ||||||||||||| | |||| | ||||| |||| ||||| || Sbjct 56461729 TCTCTTACAGCCCTCGTAGTTCATATATCGGATTTTTCCAAAGATTTCCCGTTCCTT--C 56461786 Query 51054 CGGCCT--GTCGTGCACACCGCAAATTGACCACATACAACC 51092 | |||| |||||| | || || || ||||||||||| || Sbjct 56461787 CAGCCTTGGTCGTGAATGCCACAGATGGACCACATACATCC 56461827 >seq2 Length=60074718 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| || || || ||||| ||| || | |||||||||||||| || |||||||| | || Sbjct 56214140 AGGAATCCCTCCCGACCAGCAGAGGTTGATTTTTGCCGGCAAGCAGTTAGAAGACGGCCG 56214081 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 || || || |||||||| || ||||| || || |||| || ||| || | || || Sbjct 56214080 TACCTTGTCGGACTACAATATCCAGAAAGAGTCTACCTTACACTTGGTGTTACGTCTTAG 56214021 Query 25220 AGGAGG 25225 |||||| Sbjct 56214020 AGGAGG 56214015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433301388108785