Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1597 96.9 4e-15 seq1 96.9 4e-15 >seq1597 Length=274804 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || || || ||| |||||||| ||||||| |||||||| ||||||||| Sbjct 211561 ATGTAAGTGTCAATCAAAAGACTGTACATTTCTGAATGGATGTTCTCCATGGCAATTTGG 211620 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 ||||| || |||||||| ||||| ||| || ||||||| ||||||||| || Sbjct 211621 AATCCATAAAAACATCTTGCTTCAGTGGATTGGACTTCTTTGCTAAATCTCTCCAC 211676 >seq1 Length=104615532 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || || || ||| |||||||| ||||||| |||||||| ||||||||| Sbjct 19031500 ATGTAAGTGTCAATCAAAAGACTGTACATTTCTGAATGGATGTTCTCCATGGCAATTTGG 19031441 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 ||||| || |||||||| ||||| ||| || ||||||| ||||||||| || Sbjct 19031440 AATCCATAAAAACATCTTGCTTCAGTGGATTGGACTTCTTTGCTAAATCTCTCAAC 19031385 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/215 (69%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 ||||| |||||||| | || || | | || | ||||||||||| ||||| | ||| Sbjct 19031865 TCATTACTGAATGTAAGTCCAGGCATGATCCCCCTCTTCTTGAGCCAGAATATGGCGGCA 19031806 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 ||||| ||| || || || ||||| ||||| ||||| | |||| || || | || Sbjct 19031805 AAACTTCCACTGAAGAAGATTCCTTCTACGGCAGCAAAGCCAACAACTCGCTCTCCGTAA 19031746 Query 93254 TTTGCGGAATTACT----GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACA 93309 | | ||| || | ||||||||| | |||||| ||||| || || || | ||| Sbjct 19031745 GTAG----ATTCCTCGTCACCGATCCATTTAATAGCCCAGTCGGCCTTCTTTTTCACACA 19031690 Query 93310 AGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 || | |||||| || || || ||||| || |||| Sbjct 19031689 GGGCATTGTTTCAATGGCATTGAATAGATACTCTC 19031655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556825724730360