Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 1e-13 >seq3 Length=91555047 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || ||||| ||||| ||| ||||| ||| || | Sbjct 54872135 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54872194 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || || ||||| ||||| | || | ||||| Sbjct 54872195 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54872254 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| ||||| | || || || ||| || | || || || Sbjct 54872255 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54872314 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATA 22063 ||||||||||| || || || ||| | ||| | ||| | |||||||| || Sbjct 54872315 ATTCAGAAGGAGTCCACACTCCATCTTGTACTTCGTCTCCGAGGAGGTTA 54872364 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || ||||| ||||| ||| ||||| ||| || | Sbjct 54869300 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54869359 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || || ||||| ||||| | || | ||||| Sbjct 54869360 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54869419 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| ||||| | || || || ||| || | || || || Sbjct 54869420 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54869479 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATA 22063 || |||||||| || || || ||| | ||| | ||| | |||||||| || Sbjct 54869480 ATCCAGAAGGAGTCCACACTCCATCTTGTACTTCGTCTCCGAGGAGGTTA 54869529 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || ||||| ||||| ||| ||||| ||| || | Sbjct 54870629 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54870688 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || || ||||| ||||| | || | ||||| Sbjct 54870689 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54870748 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| ||||| | || || || ||| || | || || || Sbjct 54870749 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54870808 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATA 22063 || |||||||| || || || ||| | ||| | ||| | |||||||| || Sbjct 54870809 ATCCAGAAGGAGTCCACACTCCATCTTGTACTTCGTCTCCGAGGAGGTTA 54870858 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || ||||| ||||| ||| ||||| ||| || | Sbjct 54872496 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54872555 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || || ||||| ||||| | || | ||||| Sbjct 54872556 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54872615 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| ||||| | || || || ||| || | || || || Sbjct 54872616 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54872675 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATA 22063 || |||||||| || || || ||| | ||| | ||| | |||||||| || Sbjct 54872676 ATCCAGAAGGAGTCCACACTCCATCTTGTACTTCGTCTCCGAGGAGGTTA 54872725 Score = 82.4 bits (90), Expect = 5e-11 Identities = 163/240 (68%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || ||||| ||||| || ||||| ||| || | Sbjct 54870274 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACGTTGGAAGTAGAACCCTCT 54870333 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || || ||||| ||||| | || | ||||| Sbjct 54870334 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54870393 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| ||||| | || || || ||| || | || || || Sbjct 54870394 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54870453 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATA-TTAATAATA 22072 || |||||||| || || || ||| | ||| | ||| | |||||||| || | ||| ||| Sbjct 54870454 ATCCAGAAGGAGTCCACACTCCATCTTGTACTTCGTCTCCGAGGAGGTTAGTGAATTATA 54870513 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || ||||| ||||| ||| ||||| ||| || | Sbjct 54873067 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54873126 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || || ||||| ||||| | || | ||||| Sbjct 54873127 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54873186 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| ||||| | || || || ||| || | || || || Sbjct 54873187 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54873246 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || |||||||| || || || ||| | ||| | ||| | |||||||| Sbjct 54873247 ATCCAGAAGGAGTCCACACTCCATCTTGTACTTCGTCTCAGAGGAGGA 54873294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358102806548806