Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq9 109 5e-19 seq3 86.0 5e-12 >seq9 Length=97764462 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 114180 TGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGT 114239 ||| |||| || ||||| || |||||||||||| || ||| || ||||||||| ||| Sbjct 51007021 TGTTTCGTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAAGCTGT 51006962 Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 || || || |||| | |||||| || || || || || || |||||||| || ||| Sbjct 51006961 TTTCCGGCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGAT-TTT 51006903 Query 114300 TGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358 | ||| | | ||| | ||||| | || || || || | || | |||||||| || Sbjct 51006902 AGCCTTAACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGT 51006843 Query 114359 CAGAGTTTTTACAAAAATCTGCAT 114382 |||||||| ||||| |||||||| Sbjct 51006842 GAGAGTTTTGACAAATATCTGCAT 51006819 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| ||||| | || || ||||| || |||||||||||| || ||| || |||||| Sbjct 51006800 AACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTC 51006741 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||| ||||| || || |||| | |||||| || || || || || || |||||||| Sbjct 51006740 AAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTG 51006681 Query 114293 AATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTT 114351 || ||| | ||| | | ||| | ||||| | || || || || | || | |||| Sbjct 51006680 GAT-TTTAGCCTTAACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTT 51006622 Query 114352 TGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 |||| || |||||||| || || |||||||||| Sbjct 51006621 TGCCAGTGAGAGTTTTCACGAAGATCTGCATGG 51006589 >seq3 Length=91555047 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 114237 TGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATC 114296 ||||||||||| |||| | | ||||||||| || ||||| || || || || ||| Sbjct 54869445 TGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATC 54869386 Query 114297 TTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCG 114356 || || | | |||| |||||| | || ||| || |||| ||| | || ||||| Sbjct 54869385 TTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCT 54869326 Query 114357 GTCAGAGTTTTTACAAAAATCTGCATG 114383 ||||| || || ||||||||||||||| Sbjct 54869325 GTCAGGGTCTTCACAAAAATCTGCATG 54869299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 114237 TGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATC 114296 ||||||||||| |||| | | ||||||||| || ||||| || || || || ||| Sbjct 54870774 TGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATC 54870715 Query 114297 TTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCG 114356 || || | | |||| |||||| | || ||| || |||| ||| | || ||||| Sbjct 54870714 TTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCT 54870655 Query 114357 GTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || |||||||||||||| Sbjct 54870654 GTCAGGGTCTTCACAAAAATCTGCAT 54870629 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 114237 TGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATC 114296 ||||||||||| |||| | | ||||||||| || ||||| || || || || ||| Sbjct 54872080 TGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATC 54872021 Query 114297 TTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCG 114356 || || | | |||| |||||| | || ||| || |||| ||| | || ||||| Sbjct 54872020 TTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCT 54871961 Query 114357 GTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || |||||||||||||| Sbjct 54871960 GTCAGGGTCTTCACAAAAATCTGCAT 54871935 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 114237 TGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATC 114296 ||||||||||| |||| | | ||||||||| || ||||| || || || || ||| Sbjct 54872280 TGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATC 54872221 Query 114297 TTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCG 114356 || || | | |||| |||||| | || ||| || |||| ||| | || ||||| Sbjct 54872220 TTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCT 54872161 Query 114357 GTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || |||||||||||||| Sbjct 54872160 GTCAGGGTCTTCACAAAAATCTGCAT 54872135 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 114237 TGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATC 114296 ||||||||||| |||| | | ||||||||| || ||||| || || || || ||| Sbjct 54872641 TGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATC 54872582 Query 114297 TTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCG 114356 || || | | |||| |||||| | || ||| || |||| ||| | || ||||| Sbjct 54872581 TTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCT 54872522 Query 114357 GTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || |||||||||||||| Sbjct 54872521 GTCAGGGTCTTCACAAAAATCTGCAT 54872496 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 114237 TGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATC 114296 ||||||||||| |||| | | ||||||||| || ||||| || || || || ||| Sbjct 54873212 TGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATC 54873153 Query 114297 TTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCG 114356 || || | | |||| |||||| | || ||| || |||| ||| | || ||||| Sbjct 54873152 TTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCT 54873093 Query 114357 GTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || |||||||||||||| Sbjct 54873092 GTCAGGGTCTTCACAAAAATCTGCAT 54873067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420108598364868