Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 120 6e-22 seq1597 114 2e-20 >seq1 Length=104615532 Score = 120 bits (132), Expect = 6e-22 Identities = 163/226 (72%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| ||||| || || |||||||| | || |||||||| |||||||| | || Sbjct 19031663 CTATTCAATGCCATTGAAACAATGCCCTGTGTGAAAAAGAAGGCCGACTGGGCTATTAAA 19031722 Query 42669 TGGATCGAGAGTCCCGACGCA---ACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTC 42725 ||||||| || ||| | | || | ||| ||| | | || | |||| | ||||| Sbjct 19031723 TGGATCG---GTGACGAGGAATCTACTTACGGAGAGCGAGTTGTTGGCTTTGCTGCCGTA 19031779 Query 42726 GAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCG 42785 || || ||||||||| || || ||| |||| |||||||||||| ||| || | Sbjct 19031780 GAAGGAATCTTCTTCAGTGGAAGTTTTGCCGCCATATTCTGGCTCAAGAAGAGGGGGATC 19031839 Query 42786 ATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||||| ||||| || ||| || ||||| ||||||||||| |||| Sbjct 19031840 ATGCCTGGACTTACATTCAGTAATGAACTTATCAGCAGGGATGAGG 19031885 >seq1597 Length=274804 Score = 114 bits (126), Expect = 2e-20 Identities = 164/227 (72%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| ||||| || || |||||||| | ||||||||||| |||||||| | || Sbjct 211398 CTATTCAATGCCATTGAAACAATGCCCTGTGTGAAGAAGAAGGCCGACTGGGCTATTAAA 211339 Query 42669 TGGATCGAGAGTCCCGACGCA---ACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTC 42725 ||||| | || ||| | | || | ||| ||| | | || | |||| | ||||| Sbjct 211338 TGGATTG---GTGACGAGGAATCTACTTACGGAGAGCGAGTTGTTGGCTTTGCTGCCGTA 211282 Query 42726 GAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGG-TGTC 42784 || || ||||||||| || || ||| |||| |||||||| ||| ||| || | || Sbjct 211281 GAAGGAATCTTCTTCAGTGGAAGTTTTGCCGCCATATTCTGGCTGAAGAAGAGGGGTATC 211222 Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||||| ||||| || ||| || ||||| ||||||||||| |||| Sbjct 211221 -ATGCCTGGACTTACATTCAGTAATGAACTTATCAGCAGGGATGAGG 211176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944279718434640