Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq9 138 3e-27 seq3 132 1e-25 seq1 98.7 2e-15 seq8 91.5 3e-13 >seq9 Length=97764462 Score = 138 bits (152), Expect = 3e-27 Identities = 153/203 (75%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 288275 TCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTC 288334 ||||| ||||| ||||| || || |||| || ||||| || ||||| | ||||||| Sbjct 51007017 TCGTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAAGCTGTTTTC 51006958 Query 288335 CTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCG 288391 | || ||||||| |||||| ||| |||||| ||||| ||||| ||||||||||| | Sbjct 51006957 CGGCAAAGATCAAACGCTGCTGA---TCTGGGGGGATTCCCTCTTTGTCCTGGATTTTAG 51006901 Query 288392 CTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCA 288451 | || || ||||| |||| || | || ||||| || ||||| || || || || | Sbjct 51006900 CCTTAACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGTGA 51006841 Query 288452 GAGTCTTGACGAATATCTGCATT 288474 |||| ||||| |||||||||||| Sbjct 51006840 GAGTTTTGACAAATATCTGCATT 51006818 Score = 131 bits (144), Expect = 4e-25 Identities = 146/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || |||| || ||||| || ||||| | |||||||| || ||| Sbjct 51006781 TCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCAAAG 51006722 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| ||| |||||| ||||| ||||| ||||||||||| || || || Sbjct 51006721 ATCAAACGCTGCTGA---TCTGGGGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTAACA 51006665 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| |||| || | || ||||| || ||||| || || || || ||||| || Sbjct 51006664 TTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGTGAGAGTTTTC 51006605 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 51006604 ACGAAGATCTGCAT 51006591 >seq3 Length=91555047 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | |||||| ||||| | ||| || || ||||| |||||||| | Sbjct 54870500 CCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGAC 54870441 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | |||||| || || ||||| || || ||||||| | |||||| |||||| Sbjct 54870440 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGG---TCTGGG 54870384 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || ||||||||||| || || || || || || || | || | |||| Sbjct 54870383 GGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCT 54870324 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | |||||| ||||| || ||||| ||||| || || |||||||| Sbjct 54870323 ACTTCCAACGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54870274 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | |||||| ||||| | ||| || || ||||| |||||||| | Sbjct 54869526 CCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGAC 54869467 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | |||||| || || ||||| || || ||||||| | |||||| |||||| Sbjct 54869466 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGG---TCTGGG 54869410 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || ||||||||||| || || || || || || || | || | |||| Sbjct 54869409 GGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCT 54869350 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 54869349 ACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54869300 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | |||||| ||||| | ||| || || ||||| |||||||| | Sbjct 54870855 CCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGAC 54870796 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | |||||| || || ||||| || || ||||||| | |||||| |||||| Sbjct 54870795 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGG---TCTGGG 54870739 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || ||||||||||| || || || || || || || | || | |||| Sbjct 54870738 GGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCT 54870679 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 54870678 ACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54870629 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | |||||| ||||| | ||| || || ||||| |||||||| | Sbjct 54872722 CCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGAC 54872663 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | |||||| || || ||||| || || ||||||| | |||||| |||||| Sbjct 54872662 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGG---TCTGGG 54872606 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || ||||||||||| || || || || || || || | || | |||| Sbjct 54872605 GGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCT 54872546 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 54872545 ACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54872496 Score = 127 bits (140), Expect = 5e-24 Identities = 172/237 (73%), Gaps = 7/237 (3%) Strand=Plus/Minus Query 288240 TACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATA 288299 |||| |||| || | ||| | |||||| ||||| | ||| || || ||||| ||||| Sbjct 54873299 TACA-GTCCTCCTCTGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATA 54873241 Query 288300 GTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGA 288359 ||| | || || | |||||| || || ||||| || || ||||||| | |||||| Sbjct 54873240 GTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGG-- 54873183 Query 288360 ATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCT 288416 |||||| ||||| || ||||||||||| || || || || || || || | || Sbjct 54873182 -TCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGA 54873124 Query 288417 CGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||||||| | ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 54873123 GGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54873067 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | |||||| ||||| | ||| || || || || |||||||| | Sbjct 54872361 CCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGAATGTTATAGTCTGAC 54872302 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | |||||| || || ||||| || || ||||||| | |||||| |||||| Sbjct 54872301 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGG---TCTGGG 54872245 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || ||||||||||| || || || || || || || | || | |||| Sbjct 54872244 GGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCT 54872185 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 54872184 ACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54872135 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || |||||||| | || || | |||||| || || ||||| || || ||| Sbjct 54872125 TCCTTCTGAATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAG 54872066 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | |||||| |||||| ||||| || ||||||||||| || || || || Sbjct 54872065 ATCAATCTCTGTTGG---TCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACA 54872009 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | ||||||||| | ||||| ||||| || ||||| ||||| Sbjct 54872008 TTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTC 54871949 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 54871948 ACAAAAATCTGCAT 54871935 >seq1 Length=104615532 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/192 (72%), Gaps = 5/192 (3%) Strand=Plus/Plus Query 268462 TTTCCCATTCAATATCATGATCTGTGGAACATGTACAAGAAGGCAGTGGCAACCTTTTGG 268521 |||||||| || ||||||||| | ||| | |||||||||||||||| |||| | || ||| Sbjct 19030964 TTTCCCATCCAGTATCATGATATATGGCAAATGTACAAGAAGGCAGAGGCATCGTTCTGG 19031023 Query 268522 ACCACCGAGGAAGTTCCTCTTAACGCA-GACGTTGCAGACTGGCGTGAGAAACTGAACAA 268580 || ||||||||||| | ||| | | ||| | || ||||| || || ||||| || Sbjct 19031024 ACAGCCGAGGAAGTTGAT-TTATCCAAGGACTTGCCACACTGG---GAAAATCTGAAGAA 19031079 Query 268581 CGATGAACGACACTTCATCAAACATATTCTGGGGTTCTTTGCAGGCTCCGACGGTATCGT 268640 || || |||| |||||| ||| | || | |||||||| | | ||||| || || Sbjct 19031080 GGACGAGAGACATTTCATCTCTCATGTGCTAGCCTTCTTTGCTGCCAGTGACGGAATAGT 19031139 Query 268641 GATGGAAAATCT 268652 | ||||| || Sbjct 19031140 TAACGAAAACCT 19031151 >seq8 Length=26790906 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 |||||||||||||| ||||| || || || |||||||||| ||| | ||| || || Sbjct 18129018 CCTTCTTTATCCTGTATTTTGGCCTTGACATTTTCTATAGTATCAGAGGGTTCCACCTCC 18128959 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 | ||||| ||||||||||||| ||||| || || ||||||||| || Sbjct 18128958 AAGGTGATGGTCTTCCCGGTCAATGTCTTCACAAAGATCTGCATTTTG 18128911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179578238931442