Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq9 104 2e-17 seq2 84.2 2e-11 >seq9 Length=97764462 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||| | ||| || | ||| | || || ||||| || ||||||||||| | Sbjct 51006817 CCTCCTCTCAAACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCGGAC 51006758 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||||||||| || |||||| | || | |||||||| || || || Sbjct 51006757 AGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGGGGG 51006698 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| ||||| || || ||||| ||| ||| || | || || || || ||| Sbjct 51006697 ATTCCCTCTTTGTCCTGGATTTTAGCCTTAACATTTTCGATAGTGTCTGAGGGCTCAACT 51006638 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | || ||||| || | |||||| ||||| || ||||| Sbjct 51006637 TCAAGTGTGATTGTTTTGCCAGTGAGAGTTTTCACGAAGATCTGCAT 51006591 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64245 TCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGC 64304 |||| || ||||| || ||||||||||| | | ||||| | ||||||||||| || | Sbjct 51007017 TCGTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAAGCTGTTTTC 51006958 Query 64305 CGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCT 64364 ||||| | || | |||||||| || || || ||||| ||||| || || ||||| || Sbjct 51006957 CGGCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATTTTAGCCT 51006898 Query 64365 TTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAG 64424 | ||| || | || || || || ||||| | || | || ||||| || | || Sbjct 51006897 TAACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGTGAGAG 51006838 Query 64425 TTTTTACGAAAATTTGCATT 64444 |||| || || || |||||| Sbjct 51006837 TTTTGACAAATATCTGCATT 51006818 >seq2 Length=60074718 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || || ||||| || | | ||| || ||||||| | |||||||||| Sbjct 56214045 GTAGACTCTTTCTGGATATTGTAGTCCGACAAGGTACGGCCGTCTTCTAACTGCTTGCCG 56214104 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 ||| |||| | || ||||||||||||||| |||||| Sbjct 56214105 GCAAAAATCAACCTCTGCTGGTCGGGAGGGATTCCT 56214140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499613328623160