Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq9 141 9e-29 seq3 87.8 2e-12 >seq9 Length=97764462 Score = 141 bits (156), Expect = 9e-29 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | || |||||||| || || ||||||||| || ||||| ||| || Sbjct 51006799 ACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCA 51006740 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||||||||| || ||||||| ||||||||||| || || || ||||| |||||| | Sbjct 51006739 AGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGG 51006680 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| ||| | | ||||| ||||| | ||| ||||| | || | |||||| Sbjct 51006679 ATTTTAGCCTTAACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTG 51006620 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || || |||||||| || || |||||||||| Sbjct 51006619 CCAGTGAGAGTTTTCACGAAGATCTGCATGG 51006589 Score = 141 bits (156), Expect = 9e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 126911 TGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGT 126970 ||| |||| |||||||| || || ||||||||| || ||||| ||| || |||||| Sbjct 51007021 TGTTTCGTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAAGCTGT 51006962 Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 ||||| || ||||||| ||||||||||| || || || ||||| |||||| |||||| Sbjct 51006961 TTTCCGGCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATTTTA 51006902 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||| | | ||||| ||||| | ||| ||||| | || | |||||||| || Sbjct 51006901 GCCTTAACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGTG 51006842 Query 127091 AGAGTTTTTACAAAAATCTGCAT 127113 |||||||| ||||| |||||||| Sbjct 51006841 AGAGTTTTGACAAATATCTGCAT 51006819 >seq3 Length=91555047 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | |||||| ||||| ||||||||| ||| || || || || || |||||||| Sbjct 54869454 TCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTA 54869395 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | || ||||| | ||| | Sbjct 54869394 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATG 54869335 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||||||||||||| Sbjct 54869334 GTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCATG 54869299 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | |||||| ||||| ||||||||| ||| || || || || || |||||||| Sbjct 54870783 TCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTA 54870724 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | || ||||| | ||| | Sbjct 54870723 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATG 54870664 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || |||||||||||||| Sbjct 54870663 GTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54870629 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | |||||| ||||| ||||||||| ||| || || || || || |||||||| Sbjct 54872089 TCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTA 54872030 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | || ||||| | ||| | Sbjct 54872029 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATG 54871970 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || |||||||||||||| Sbjct 54871969 GTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54871935 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | |||||| ||||| ||||||||| ||| || || || || || |||||||| Sbjct 54872289 TCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTA 54872230 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | || ||||| | ||| | Sbjct 54872229 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATG 54872170 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || |||||||||||||| Sbjct 54872169 GTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54872135 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | |||||| ||||| ||||||||| ||| || || || || || |||||||| Sbjct 54872650 TCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTA 54872591 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | || ||||| | ||| | Sbjct 54872590 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATG 54872531 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || |||||||||||||| Sbjct 54872530 GTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54872496 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | |||||| ||||| ||||||||| ||| || || || || || |||||||| Sbjct 54873221 TCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTA 54873162 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | || ||||| | ||| | Sbjct 54873161 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATG 54873102 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || |||||||||||||| Sbjct 54873101 GTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54873067 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | |||||| ||||| ||||||||| ||| || || || || || |||||||| Sbjct 54870428 TCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTA 54870369 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | || ||||| | || | Sbjct 54870368 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAACGTGATG 54870309 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || |||||||||||||| Sbjct 54870308 GTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54870274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475470849393360