Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 2e-14 seq1597 93.3 7e-14 >seq1 Length=104615532 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/136 (76%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 160308 CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGA 160367 |||| || | ||||| | ||||| ||| |||||||| || | ||| |||||||||| Sbjct 19031153 CCAGGTTTTCGTTAACTATTCCGTCACTGGCAGCAAAGAAGGCTAGCACATGAGAGATGA 19031094 Query 160368 AATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAA 160427 ||||||||||||| || || || ||||||||||||| || ||| | || ||||||| Sbjct 19031093 AATGTCTCTCGTCCTTCTTCAG---ATTTTCCCAGTGTGGCAAGTCCTTGGATAAATCAA 19031037 Query 160428 CCTCTTCCGCGCTCCA 160443 | || || || |||| Sbjct 19031036 CTTCCTCGGCTGTCCA 19031021 >seq1597 Length=274804 Score = 93.3 bits (102), Expect = 7e-14 Identities = 85/107 (79%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 160337 GCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTT 160396 || |||||||| || | ||||||||||||||||||||||||||| || || || ||| Sbjct 211933 GCAGCAAAGAAGGCTAGCACGTGAGAGATGAAATGTCTCTCGTCCTTCTTCAG---ATTT 211989 Query 160397 TCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 |||||||||| || ||| | || |||||||| || || || |||| Sbjct 211990 TCCCAGTGTGGCAAGTCCTTGGATAAATCAACTTCCTCGGCTGTCCA 212036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795105115161840