Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3 125 2e-23 seq9 122 2e-22 >seq3 Length=91555047 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || |||||||| |||| ||| ||||| | || || ||||| || Sbjct 54870485 AGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCC 54870426 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || || || ||||| | | ||| ||||| || |||||| || ||| Sbjct 54870425 TCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCC 54870366 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | |||||| | | |||||| ||||||||||| ||| Sbjct 54870365 TGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAACGTGATGGTC 54870306 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||||||||| || Sbjct 54870305 TTGCCTGTCAGGGTCTTCACAAAAATCTG 54870277 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || |||||||| |||| ||| ||||| | || || ||||| || Sbjct 54869511 AGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCC 54869452 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || || || ||||| | | ||| ||||| || |||||| || ||| Sbjct 54869451 TCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCC 54869392 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | |||||| | | |||||| ||||| ||||| ||| Sbjct 54869391 TGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTC 54869332 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||||||||| || Sbjct 54869331 TTGCCTGTCAGGGTCTTCACAAAAATCTG 54869303 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || |||||||| |||| ||| ||||| | || || ||||| || Sbjct 54870840 AGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCC 54870781 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || || || ||||| | | ||| ||||| || |||||| || ||| Sbjct 54870780 TCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCC 54870721 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | |||||| | | |||||| ||||| ||||| ||| Sbjct 54870720 TGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTC 54870661 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||||||||| || Sbjct 54870660 TTGCCTGTCAGGGTCTTCACAAAAATCTG 54870632 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || |||||||| |||| ||| ||||| | || || ||||| || Sbjct 54872707 AGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCC 54872648 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || || || ||||| | | ||| ||||| || |||||| || ||| Sbjct 54872647 TCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCC 54872588 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | |||||| | | |||||| ||||| ||||| ||| Sbjct 54872587 TGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTC 54872528 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||||||||| || Sbjct 54872527 TTGCCTGTCAGGGTCTTCACAAAAATCTG 54872499 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || |||||||| |||| ||| ||||| | || || ||||| || Sbjct 54873278 AGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCC 54873219 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || || || ||||| | | ||| ||||| || |||||| || ||| Sbjct 54873218 TCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCC 54873159 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | |||||| | | |||||| ||||| ||||| ||| Sbjct 54873158 TGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTC 54873099 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||||||||| || Sbjct 54873098 TTGCCTGTCAGGGTCTTCACAAAAATCTG 54873070 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || |||||||| || | ||| ||||| | || || ||||| || Sbjct 54872346 AGTACAAGATGGAGTGTGGACTCCTTCTGAATGTTATAGTCTGACAGTGTTCTTCCGTCC 54872287 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || || || ||||| | | ||| ||||| || |||||| || ||| Sbjct 54872286 TCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCC 54872227 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | |||||| | | |||||| ||||| ||||| ||| Sbjct 54872226 TGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTC 54872167 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||||||||| || Sbjct 54872166 TTGCCTGTCAGGGTCTTCACAAAAATCTG 54872138 Score = 100 bits (110), Expect = 7e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 199437 ACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGA 199496 ||||||| || | ||| ||||| | || || ||||| || |||| ||| || || || | Sbjct 54872127 ACTCCTTCTGAATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAA 54872068 Query 199497 AGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGG 199556 |||| | | ||| ||||| || |||||| || ||||| ||||| ||| || Sbjct 54872067 AGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACAT 54872008 Query 199557 ATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCA 199616 || | |||||| | | |||||| ||||| ||||| ||||| || || || || |||| Sbjct 54872007 TCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCA 54871948 Query 199617 CAAAAATTTG 199626 ||||||| || Sbjct 54871947 CAAAAATCTG 54871938 >seq9 Length=97764462 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 |||||||| ||||| || |||| |||||| || | || ||| | |||||||| ||||| Sbjct 51006793 TGGAGAGTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAAGCTGT 51006734 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 |||||||| ||||| | ||||||||| || || ||||| ||| ||||| || || Sbjct 51006733 TTTCCGGCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATTTTA 51006674 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||||| ||||||| | || || || | ||||| || || || ||| Sbjct 51006673 GCCTTAACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGTG 51006614 Query 199607 AGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || || Sbjct 51006613 AGAGTTTTCACGAAGATCTG 51006594 Score = 111 bits (122), Expect = 4e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || ||||| || |||| |||||| || | || ||| | |||||||| ||||| |||||| Sbjct 51007015 GTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAAGCTGTTTTCCG 51006956 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||| | ||||||||| || || ||||| ||| ||||| || || ||| Sbjct 51006955 GCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTA 51006896 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||||| ||||||| | || || || | ||||| || || || ||||||||| Sbjct 51006895 ACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGTGAGAGTT 51006836 Query 199613 TTCACAAAAATTTG 199626 || ||||| || || Sbjct 51006835 TTGACAAATATCTG 51006822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178845486242613