Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 1e-14 seq9 82.4 9e-11 >seq2 Length=60074718 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| ||||||| || || ||| ||| || |||||||||||||| || Sbjct 56214015 CCTCCTCTAAGACGTAACACCAAGTGTAAGGTAGACTCTTTCTGGATATTGTAGTCCGAC 56214074 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 | || || |||| || | |||||||||||| || ||||| | ||||||||||| Sbjct 56214075 AAGGTACGGCCGTCTTCTAACTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCGG 56214129 >seq9 Length=97764462 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/162 (72%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 46433 CGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTC 46492 || ||||| |||||||| || ||||| || |||||||| ||||| || | || | | | Sbjct 51001914 CGATCGTCCTCGAGCTGTTTCCCGGCAAAAATCAAGCGTTGCTGATCAGGTGGTATTCCC 51001855 Query 46493 TCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCG-CTCGATTCCACATCCAC 46551 |||||||| |||||||| || | || | | | || || || | ||||| | Sbjct 51001854 TCCTTGTCTTGAATCTTCTTTTTCACGTTCTCTATGCTATCATCTTCAT-CTACATCTAG 51001796 Query 46552 CGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||||||| || || || ||||| |||||||| ||||| Sbjct 51001795 AGTGATGGTTTTACCAGTGAGTGTTTTCACAAAGATCTGCAT 51001754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565202797046280