Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3 129 1e-24 seq9 127 5e-24 >seq3 Length=91555047 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || ||||| || || || | || ||||| || || || Sbjct 54872343 ACAAGATGGAGTGTGGACTCCTTCTGAATGTTATAGTCTGACAGTGTTCTTCCGTCCTCC 54872284 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||| ||||| || ||||| | || ||||||||||| ||||| || || || || || Sbjct 54872283 AACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGG 54872224 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| |||||||||||||| || ||| ||||| | ||| | ||||| Sbjct 54872223 ATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTG 54872164 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| || || || || | ||||| Sbjct 54872163 CCTGTCAGGGTCTTCACAAAAATCTGCAT 54872135 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || || || || | || ||||| || || || Sbjct 54869508 ACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCC 54869449 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||| ||||| || ||||| | || ||||||||||| ||||| || || || || || Sbjct 54869448 AACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGG 54869389 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| |||||||||||||| || ||| ||||| | ||| | ||||| Sbjct 54869388 ATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTG 54869329 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| || || || || | ||||| Sbjct 54869328 CCTGTCAGGGTCTTCACAAAAATCTGCAT 54869300 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || || || || | || ||||| || || || Sbjct 54870837 ACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCC 54870778 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||| ||||| || ||||| | || ||||||||||| ||||| || || || || || Sbjct 54870777 AACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGG 54870718 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| |||||||||||||| || ||| ||||| | ||| | ||||| Sbjct 54870717 ATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTG 54870658 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| || || || || | ||||| Sbjct 54870657 CCTGTCAGGGTCTTCACAAAAATCTGCAT 54870629 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || || || || | || ||||| || || || Sbjct 54872704 ACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCC 54872645 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||| ||||| || ||||| | || ||||||||||| ||||| || || || || || Sbjct 54872644 AACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGG 54872585 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| |||||||||||||| || ||| ||||| | ||| | ||||| Sbjct 54872584 ATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTG 54872525 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| || || || || | ||||| Sbjct 54872524 CCTGTCAGGGTCTTCACAAAAATCTGCAT 54872496 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||||| || || |||||||| || || || || || || | || || Sbjct 54873288 TCTGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGACAGTGT 54873229 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || || || | ||| ||||| || ||||| | || ||||||||||| ||||| || Sbjct 54873228 TCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCC 54873169 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || || || || || || |||||| |||||||||||||| || ||| ||||| | Sbjct 54873168 CTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAA 54873109 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| ||||||| || || || || | ||||| Sbjct 54873108 GGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54873067 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || || || || | || ||||| || || || Sbjct 54870482 ACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCC 54870423 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||| ||||| || ||||| | || ||||||||||| ||||| || || || || || Sbjct 54870422 AACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGG 54870363 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| |||||||||||||| || ||| ||||| | || | ||||| Sbjct 54870362 ATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAACGTGATGGTCTTG 54870303 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| || || || || | ||||| Sbjct 54870302 CCTGTCAGGGTCTTCACAAAAATCTGCAT 54870274 Score = 114 bits (126), Expect = 3e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 194948 ACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGA 195007 |||| || ||||| || || || | || ||||| || || || | ||| ||||| || | Sbjct 54872127 ACTCCTTCTGAATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAA 54872068 Query 195008 AGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGT 195067 |||| | || ||||||||||| ||||| || || || || || || || |||||| | Sbjct 54872067 AGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACAT 54872008 Query 195068 TCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTA 195127 ||||||||||||| || ||| ||||| | ||| | ||||| ||||||| || || | Sbjct 54872007 TCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCA 54871948 Query 195128 CGAACACTTGCAT 195140 | || | ||||| Sbjct 54871947 CAAAAATCTGCAT 54871935 >seq9 Length=97764462 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || |||||||||||||| || || |||||||||| ||||| | |||||||| ||||| Sbjct 51006793 TGGAGAGTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAAGCTGT 51006734 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | || || || ||||| || || || |||||||| || ||||| Sbjct 51006733 TTTCCGGCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATTTTA 51006674 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || || || ||||| || || |||||||| || | || || || || Sbjct 51006673 GCCTTAACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGTG 51006614 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | |||||| ||||| | ||||| Sbjct 51006613 AGAGTTTTCACGAAGATCTGCAT 51006591 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||||||||| || || |||||||||| ||||| | |||||||| ||||| || || Sbjct 51007015 GTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAAGCTGTTTTCCG 51006956 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| | || || || ||||| || || || |||||||| || ||||| ||| Sbjct 51006955 GCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTA 51006896 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || || || ||||| || || |||||||| || | || || || || | |||| Sbjct 51006895 ACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGTGAGAGTT 51006836 Query 195124 TTTACGAACACTTGCATT 195141 || || || | |||||| Sbjct 51006835 TTGACAAATATCTGCATT 51006818 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| || || || ||||| ||| || | | ||| ||||| || Sbjct 51002185 GTGAAGCGTGGACTCCTTCTGTATGTTGTAGTCGCTCAGTATGCGGTGATCCTCGAGTTG 51002126 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | ||||||||||| | || || || ||||| || | || || Sbjct 51002125 CTTCCCGGCAAAGATCAAACGTTGTTGGTCAAGGGGTATTCCCTCTTTTTCAAGGATCTT 51002066 Query 195057 TTGCTTGACGTTCTCAATGGTGTC--CGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 | || || || || || |||| || || | || || ||| ||| ||||||||| Sbjct 51002065 CTTTTTAACATTTTCGATACTGTCATCGCCCTCTACATTTAAAG--TAATTGTCTTTCCT 51002008 Query 195115 GTCAAAGTTTTTACGAACACTTGCATT 195141 || | || || ||||| | ||||||| Sbjct 51002007 GTAAGTGTCTTCACGAAGATTTGCATT 51001981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109409969440913