Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq9 107 1e-18 seq3 96.9 2e-15 >seq9 Length=97764462 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||| | | | |||||||| | || ||||| || |||||||| | Sbjct 51001982 TTCCTCCCCTAAGACGGAGCACCAAGTGGAGAGTTGACTCTTTTTGTATGTTATAAGCTT 51001923 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 || || || || || |||||||| |||||||| || | |||||||| || | | Sbjct 51001922 TCAGTTGCCGATCGTCCTCGAGCTGTTTCCCGGCAAAAATCAAGCGTTGCTGATCAGGTG 51001863 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||||||||| |||||||| ||| ||| |||| ||| | | || | Sbjct 51001862 GTATTCCCTCCTTGTCTTGAATCTTCTTTTTCACGTTCTCTATGCTATCATCTTCATCTA 51001803 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| | || |||||||| || ||||| || ||||||||||||||||| Sbjct 51001802 CATCTAGAGTGATGGTTTTACCAGTGAGTGTTTTCACAAAGATCTGCAT 51001754 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| ||||| | | |||||| || | ||| |||||||| ||||| || || | Sbjct 51006819 TTCCTCCTCTCAAACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCGG 51006760 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | || |||| || ||||||||||||||||| || | || ||||| ||| | | Sbjct 51006759 ACAGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGGG 51006700 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||| ||||| || || || || | | || | || || ||||| Sbjct 51006699 GGATTCCCTCTTTGTCCTGGATTTTAGCCTTAACATTTTCGATAGTGTCTGAGGGCTCAA 51006640 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || ||||| || |||||||| ||||| ||||||||||| Sbjct 51006639 CTTCAAGTGTGATTGTTTTGCCAGTGAGAGTTTTCACGAAGATCTGCAT 51006591 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || || || | || |||| || ||||||||||||||||| Sbjct 51007009 TCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCAAAG 51006950 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||| ||| | || | ||||| ||||| || || || || | Sbjct 51006949 ATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTAACATTT 51006890 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || |||||| || | || || ||||| || |||||||| || ||| Sbjct 51006889 TCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGTGAGAGTTTTGACA 51006830 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 51006829 AATATCTGCAT 51006819 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC-GAAAGGCTTCGTTCATCATC 34831 |||| |||| ||| || || || |||||||| ||| | |||| | ||||| || Sbjct 51001734 ACCAGATGAAGTGTAGACTCCTTTTGGATGTTATAATCCAGCAAGGAC-CTATCATCCTC 51001676 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 | ||||| || |||||||||| || ||||||||| || | || ||||| || | Sbjct 51001675 TAATTGTTTACCTGCAAATATTAATCTCTGCTGGTCTACAGGGATTCCTTCCTTCTCCAT 51001616 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 || || | ||| || | | | || |||||||||| || | ||| || || || Sbjct 51001615 GATTTTTTCTTTCACCTTTTTGACCTCCTCCGCGGCCTCAACGTCAATGGTGATCGTCTT 51001556 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | |||||| |||||||||||||| Sbjct 51001555 TCCAGTTAAAGTCTTTACAAAGATCTGCAT 51001526 >seq3 Length=91555047 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||||||||| || || ||| | | || |||| |||||| || ||||| Sbjct 54872125 TCCTTCTGAATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAG 54872066 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || || |||||| | || | |||||||| || ||||| ||||| || Sbjct 54872065 ATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGAC--AT 54872008 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| || || || || | ||| ||||| || || || || ||||||| Sbjct 54872007 TCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCA 54871948 Query 34969 CAAAGATCTGCATA 34982 |||| ||||||||| Sbjct 54871947 CAAAAATCTGCATA 54871934 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||||||||| || || ||| | | || |||| |||||| || ||||| Sbjct 54872325 TCCTTCTGAATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAG 54872266 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || || |||||| | || | |||||||| || ||||| ||||| || Sbjct 54872265 ATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGAC--AT 54872208 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| || || || || | ||| ||||| || || || || ||||||| Sbjct 54872207 TCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCA 54872148 Query 34969 CAAAGATCTGCATA 34982 |||| ||||||||| Sbjct 54872147 CAAAAATCTGCATA 54872134 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| || || ||| | | || |||| |||||| || ||||| Sbjct 54870819 TCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAG 54870760 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || || |||||| | || | |||||||| || ||||| ||||| || Sbjct 54870759 ATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGAC--AT 54870702 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| || || || || | ||| ||||| || || || || ||||||| Sbjct 54870701 TCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCA 54870642 Query 34969 CAAAGATCTGCATA 34982 |||| ||||||||| Sbjct 54870641 CAAAAATCTGCATA 54870628 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| || || ||| | | || |||| |||||| || ||||| Sbjct 54872686 TCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAG 54872627 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || || |||||| | || | |||||||| || ||||| ||||| || Sbjct 54872626 ATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGAC--AT 54872569 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| || || || || | ||| ||||| || || || || ||||||| Sbjct 54872568 TCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCA 54872509 Query 34969 CAAAGATCTGCATA 34982 |||| ||||||||| Sbjct 54872508 CAAAAATCTGCATA 54872495 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| || || ||| | | || |||| |||||| || ||||| Sbjct 54873257 TCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAG 54873198 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || || |||||| | || | |||||||| || ||||| ||||| || Sbjct 54873197 ATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGAC--AT 54873140 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| || || || || | ||| ||||| || || || || ||||||| Sbjct 54873139 TCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCA 54873080 Query 34969 CAAAGATCTGCATA 34982 |||| ||||||||| Sbjct 54873079 CAAAAATCTGCATA 54873066 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| || || ||| | | || |||| |||||| || ||||| Sbjct 54869490 TCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAG 54869431 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || || |||||| | || | |||||||| || ||||| ||||| || Sbjct 54869430 ATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGAC--AT 54869373 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| || || || || | ||| ||||| || || || || ||||||| Sbjct 54869372 TCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCA 54869313 Query 34969 CAAAGATCTGCAT 34981 |||| |||||||| Sbjct 54869312 CAAAAATCTGCAT 54869300 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| || || ||| | | || |||| |||||| || ||||| Sbjct 54870464 TCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAG 54870405 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || || |||||| | || | |||||||| || ||||| ||||| || Sbjct 54870404 ATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGAC--AT 54870347 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| || || || || | || ||||| || || || || ||||||| Sbjct 54870346 TCTCAATGGTGTCAGAGGGTTCTACTTCCAACGTGATGGTCTTGCCTGTCAGGGTCTTCA 54870287 Query 34969 CAAAGATCTGCATA 34982 |||| ||||||||| Sbjct 54870286 CAAAAATCTGCATA 54870273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324613663337592