Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 seq5 93.3 5e-14 seq1597 87.8 2e-12 >seq1 Length=104615532 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || || || || | ||||||| ||||| | |||||||| | || || || | Sbjct 19031885 CCTCATCCCTGCTGATAAGTTCATTACTGAATGTAAGTCCAGGCATGATCCCCCTCTTCT 19031826 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| | ||||| |||| ||||| || |||||||| || ||||| Sbjct 19031825 TGAGCCAGAATATGGCGGCAAAACTTCCACTGAAGAAGATTCCTTCTACGGCAGCAAAGC 19031766 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 |||| | || ||||| ||| ||| || | | | |||||||| | ||||| || | Sbjct 19031765 CAACAACTCGCTCTCCGTAAGTAGATTCCTCGTCACCGATCCATTTAATAGCCCAGTCGG 19031706 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATAC 19209 |||||||||| ||||| |||||||| || || | ||| ||||||||| Sbjct 19031705 CCTTCTTTTTCACACAGGGCATTGTTTCAATGGCATTGAATAGATAC 19031659 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 18654 ATTCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCC 18713 ||||||||||||||| || |||||||| | ||||| || ||||| || || ||||| || Sbjct 19032873 ATTCATTACTCCCATCTTCTGATATTCTCCGACTCTCTTCTCAAAAAAGTTTGTTTTACC 19032814 Query 18714 CTCTAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAT 18764 ||||| || || |||||| || ||||| ||||||| ||||| || || Sbjct 19032813 CTCTAGAGAGATTTGTTCCATGAAGTCAAAAGGATTTTCAACATTGTAAAT 19032763 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/117 (77%), Gaps = 3/117 (3%) Strand=Plus/Minus Query 19240 TCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAA 19299 || ||||| | |||||||||||||||||| || || || || || || || ||||| ||| Sbjct 19031491 TCAATCAAAAGACTGTACATTTCTGAATGGATGTTCTCCATGGCAATTTGGAATCCATAA 19031432 Query 19300 AAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACC---AAATTT 19353 |||||||||||||| || || ||||| | | |||||| || ||| |||||| Sbjct 19031431 AAACATCTTGCTTCAGTGGATTGGACTTCTTTGCTAAATCTCTCAACCTGAAAATTT 19031375 >seq5 Length=54553330 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 |||||||| ||||| ||||| || | | ||||||||||| ||||| | ||||||| | Sbjct 25741321 TGAAATTCCCCAGACAGTACCCTCCTAGTGTATATATTACTAGTATAGGCCTCTATAGCT 25741262 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||| || || | || ||||| ||||| || || ||||||| || | || || ||| Sbjct 25741261 TCATTGTTACCTAGGATCTGAGCTGTTGAGGCAGTGGGCATGGGAGCTAACAACAAACTA 25741202 Query 47448 TTTCTTACTCC 47458 || ||||| || Sbjct 25741201 TTCCTTACACC 25741191 >seq1597 Length=274804 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 18654 ATTCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCC 18713 ||||||||||||||| || |||||||| | || || || ||||| || || ||||| || Sbjct 210233 ATTCATTACTCCCATCTTCTGATATTCTCCGACCCTCTTCTCAAAAAAGTTCGTTTTACC 210292 Query 18714 CTCTAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAT 18764 ||| | || || |||||| || ||||| ||||||| ||||| ||||| Sbjct 210293 CTCCAGAGAGATTTGTTCCATGAAGTCAAAAGGATTTTCAACATTGTATAT 210343 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/117 (77%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 19240 TCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAA 19299 || ||||| | |||||||||||||||||| || || || || || || || ||||| ||| Sbjct 211570 TCAATCAAAAGACTGTACATTTCTGAATGGATGTTCTCCATGGCAATTTGGAATCCATAA 211629 Query 19300 AAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACC---AAATTT 19353 |||||||||||||| || || ||||| | | |||||| || ||| |||||| Sbjct 211630 AAACATCTTGCTTCAGTGGATTGGACTTCTTTGCTAAATCTCTCCACCTGAAAATTT 211686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562073394171960