Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 2e-12 seq1597 86.0 7e-12 >seq1 Length=104615532 Score = 87.8 bits (96), Expect = 2e-12 Identities = 79/97 (81%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 36869 ATTCATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTC 36927 |||||| |||||||| || ||||||||||| |||| |||| || ||||| ||||| || | Sbjct 19032873 ATTCATTACTCCCATCTTCTGATATTCTCCGACTC-TCTTCTCAAAAAAGTTTGTTTTAC 19032815 Query 36928 CTTCTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| || || | |||||| || ||||| ||||| Sbjct 19032814 CCTCTAGAGAGATTTGTTCCATGAAGTCAAAAGGATT 19032778 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 37565 GTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATG 37624 |||||| |||||||| || ||||| || |||||||| || || |||| || ||||| Sbjct 19031149 GTTTTCGTTAACTATTCCGTCACTGGCAGCAAAGAAGGCTAGCACATGAGAGATGAAATG 19031090 Query 37625 TCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATC 37684 ||| || || || | |||| ||| | | || || |||||||||||||| || Sbjct 19031089 TCTCTCGTCCTTCTTCAGATTTTCCCAGTGTGGCAAGTCCTTGGATAAATCAACTTCCTC 19031030 Query 37685 AACGGTCCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTAT 37744 | ||||| || |||| ||| || ||||| ||| ||||||| || || || Sbjct 19031029 GGCTGTCCAGAACGATGCCTCTGCCTTCTTGTACATTTGCCATATATCATGATACTGGAT 19030970 Query 37745 TGGAAATATTACAAA 37759 ||||||| ||||| Sbjct 19030969 GGGAAATACAACAAA 19030955 >seq1597 Length=274804 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||| || || || | ||||||| || || | ||| ||||| | ||| || || || Sbjct 211178 TCATCCCTGCTGATAAGTTCATTACTGAATGTAAGTCCAGGCATGATACCCCTCTTCTTC 211237 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| || |||||| |||| ||||| || ||||| || || ||||| | Sbjct 211238 AGCCAGAATATGGCGGCAAAACTTCCACTGAAGAAGATTCCTTCTACGGCAGCAAAGCCA 211297 Query 37320 ACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCC 37379 |||| || ||| |||| || | ||| ||||||||| | | ||| || ||| Sbjct 211298 ACAACTCGCTCTCCGTAAGTAGATTCCTCGTCACCAATCCATTTAATAGCCCAGTCGGCC 211357 Query 37380 TTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGA 37421 || || ||||| ||||||||||| || || || ||| Sbjct 211358 TTCTTCTTCACACAGGGCATTGTTTCAATGGCATTGAATAGA 211399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592279491445560