Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq9 168 5e-37 >seq9 Length=97764462 Score = 168 bits (186), Expect = 5e-37 Identities = 177/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| ||||| | ||| ||||| || || || ||||| || || |||||||||| Sbjct 51006819 TTCCTCCTCTCAAACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCGG 51006760 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | | |||| || | || || || ||||| ||||||||||| ||||| || | Sbjct 51006759 ACAGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGGG 51006700 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || || ||||| || || ||||| || ||| |||| | |||||| || | || | Sbjct 51006699 GGATTCCCTCTTTGTCCTGGATTTTAGCCTTAACATTTTCGATAGTGTCTGAGGGCTCAA 51006640 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 ||||||| |||| |||||||| || | |||||| || || |||||||||||| Sbjct 51006639 CTTCAAGTGTGATTGTTTTGCCAGTGAGAGTTTTCACGAAGATCTGCATGGTT 51006587 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || || ||||| || || |||||||||| | ||| | | |||| || | || || || Sbjct 51007015 GTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAAGCTGTTTTCCG 51006956 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| ||||||||||| ||||| || || || || ||||| || || ||||| || Sbjct 51006955 GCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTA 51006896 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| |||| | |||||| || | || |||||||| |||| |||||||| || | |||| Sbjct 51006895 ACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGTGAGAGTT 51006836 Query 101453 TTTACAAATATCTGCAT 101469 || |||||||||||||| Sbjct 51006835 TTGACAAATATCTGCAT 51006819 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | || | || | |||||| ||||| || ||||| || || ||||| Sbjct 51001752 CCTCCTCTGAGTCGGAGCACCAGATGAAGTGTAGACTCCTTTTGGATGTTATAATCCAGC 51001693 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | | || |||| || ||||| |||||||||||||| || | ||| || || || Sbjct 51001692 AAGGACCTATCATCCTCTAATTGTTTACCTGCAAATATTAATCTCTGCTGGTCTACAGGG 51001633 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || ||||||| ||| || ||| || || | | || || Sbjct 51001632 ATTCCTTCCTTCTCCATGATTTTTTCTTTCACCTTTTTGACCTCCTCCGCGGCCTCAACG 51001573 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 |||| |||| ||| || || |||||||| |||||||| |||||||| ||| Sbjct 51001572 TCAATGGTGATCGTCTTTCCAGTTAAAGTCTTTACAAAGATCTGCATTGTT 51001522 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | ||| | || || || || || || ||||||||||| || ||| | Sbjct 51001982 TTCCTCCCCTAAGACGGAGCACCAAGTGGAGAGTTGACTCTTTTTGTATGTTATAA---G 51001926 Query 101301 CGAT-AGTTCTGGCATCGTCC---AATTGCTTACCTGCAAATATCAAACGCTGTTGATCG 101356 | | |||| | ||||||| | || || || ||||| ||||| || || ||||| Sbjct 51001925 CTTTCAGTTGCCG-ATCGTCCTCGAGCTGTTTCCCGGCAAAAATCAAGCGTTGCTGATCA 51001867 Query 101357 GGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTT 101416 || || || || || || |||||||| || | ||| || | |||| | ||| Sbjct 51001866 GGTGGTATTCCCTCCTTGTCTTGAATCTTCTTTTTCACGTTCTCTATGCTATCATCTTCA 51001807 Query 101417 TCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||||| ||||| || || | ||||| ||||| |||||||| Sbjct 51001806 TCTACATCTAGAGTGATGGTTTTACCAGTGAGTGTTTTCACAAAGATCTGCAT 51001754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396254063428923