Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3 84.2 2e-11 >seq3 Length=91555047 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || || || || || || || || ||| |||| |||||||| Sbjct 54870477 ATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTG 54870418 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||||| ||||| |||| || |||||| || | ||||| |||||||| || ||||| Sbjct 54870417 TTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTT 54870358 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | || || | || || |||| ||| || || || || || Sbjct 54870357 GGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAACGTGATGGTCTTGCCTGT 54870298 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 || || || |||||||||||||| Sbjct 54870297 CAGGGTCTTCACAAAAATCTGCAT 54870274 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || ||||| || || || || || ||| |||| |||||||| Sbjct 54872338 ATGGAGTGTGGACTCCTTCTGAATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTG 54872279 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||||| ||||| |||| || |||||| || | ||||| |||||||| || ||||| Sbjct 54872278 TTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTT 54872219 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | || || | || || |||| || || || || || || Sbjct 54872218 GGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGT 54872159 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 || || || |||||||||||||| Sbjct 54872158 CAGGGTCTTCACAAAAATCTGCAT 54872135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380914205550597