Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 8e-14 seq1597 84.2 4e-11 >seq1 Length=104615532 Score = 93.3 bits (102), Expect = 8e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 25865 CTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTT 25924 |||| | || ||||| | || | ||||||||| || || || ||||| ||||| || Sbjct 19031742 CTACTTACGGAGAGCGAGTTGTTGGCTTTGCTGCCGTAGAAGGAATCTTCTTCAGTGGAA 19031801 Query 25925 CGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTAC-TTTTCC 25983 ||||| ||||| |||||||||||| ||| ||||| |||||| || || ||| || Sbjct 19031802 GTTTTGCCGCCATATTCTGGCTCAAGAAGAGGGGGATCATGCCTGGACT-TACATTCAGT 19031860 Query 25984 AACGAGCTCATCAGCAGGGACGAGG 26008 || || || ||||||||||| |||| Sbjct 19031861 AATGAACTTATCAGCAGGGATGAGG 19031885 >seq1597 Length=274804 Score = 84.2 bits (92), Expect = 4e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 25865 CTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTT 25924 |||| | || ||||| | || | ||||||||| || || || ||||| ||||| || Sbjct 211319 CTACTTACGGAGAGCGAGTTGTTGGCTTTGCTGCCGTAGAAGGAATCTTCTTCAGTGGAA 211260 Query 25925 CGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCC- 25983 ||||| ||||| |||||||| ||| ||| ||| | |||||| || || ||| || Sbjct 211259 GTTTTGCCGCCATATTCTGGCTGAAGAAGAGGGGTATCATGCCTGGACT-TACATTCAGT 211201 Query 25984 AACGAGCTCATCAGCAGGGACGAGG 26008 || || || ||||||||||| |||| Sbjct 211200 AATGAACTTATCAGCAGGGATGAGG 211176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928786294388160