Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq9 122 2e-22 seq3 118 2e-21 >seq9 Length=97764462 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || |||||||| ||||| |||| ||| | || | |||||| || || || ||| Sbjct 51006820 ATTCCTCCTCTCAAACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCG 51006761 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | |||||||||||||| || || | ||| ||||| || Sbjct 51006760 GACAGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGG 51006701 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| ||||| || || ||||| | || | |||| ||||| || || | |||| Sbjct 51006700 GGGATTCCCTCTTTGTCCTGGATTTTAGCCTTAACATTTTCGATAGTGTCTGAGGGCTCA 51006641 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || ||||| || || || ||||| || || || ||||| Sbjct 51006640 ACTTCAAGTGTGATTGTTTTGCCAGTGAGAGTTTTCACGAAGATCTGCAT 51006591 Score = 113 bits (124), Expect = 8e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 |||||||||||||| || || | ||| ||||| || || ||||| ||||| || || ||| Sbjct 51006964 TGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATT 51006905 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | || | |||| ||||| || || | ||||||||| || || || ||||| || Sbjct 51006904 TTAGCCTTAACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCA 51006845 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| |||||||| |||||| Sbjct 51006844 GTGAGAGTTTTGACAAATATCTGCATT 51006818 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||| | ||| || |||||||| | ||||| ||| || || ||||| || Sbjct 51001755 ATCCCTCCTCTGAGTCGGAGCACCAGATGAAGTGTAGACTCCTTTTGGATGTTATAATCC 51001696 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||| ||| ||||||||||| || ||||| ||||||||||| || || | Sbjct 51001695 AGCAAGGACCTATCATCCTCTAATTGTTTACCTGCAAATATTAATCTCTGCTGGTCTACA 51001636 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || || ||||| ||| | ||| | || | | |||| Sbjct 51001635 GGGATTCCTTCCTTCTCCATGATTTTTTCTTTCACCTTTTTGACCTCCTCCGCGGCCTCA 51001576 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || | || || || || || |||| || |||||||| || |||||| Sbjct 51001575 ACGTCAATGGTGATCGTCTTTCCAGTTAAAGTCTTTACAAAGATCTGCATT 51001525 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| ||||||||||| || | || |||||||| |||||||| || || ||||| || Sbjct 51001899 TGTTTCCCGGCAAAAATCAAGCGTTGCTGATCAGGTGGTATTCCCTCCTTGTCTTGAATC 51001840 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || |||| | || || |||| || || |||||||| || |||||||| Sbjct 51001839 TTCTTTTTCACGTTCTCTATGCTATCATCTTCATCTACATCTAGAGTGATGGTTTTACCA 51001780 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || ||||| Sbjct 51001779 GTGAGTGTTTTCACAAAGATCTGCAT 51001754 >seq3 Length=91555047 Score = 118 bits (130), Expect = 2e-21 Identities = 169/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 193123 TAATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATAT 193182 ||||||| | || ||||| | |||||||| ||||| | ||| | ||| || || | Sbjct 54873304 TAATTTACAGTCCTCCTCTGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGT 54873245 Query 193183 TATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTT 193242 ||||||| || | ||||| || || || ||||| || ||||| || |||||||||| Sbjct 54873244 TATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTT 54873185 Query 193243 GATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGG 193302 | || || || ||||| || ||||| || || |||| || | ||| ||| || || | Sbjct 54873184 GGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAG 54873125 Query 193303 AAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | | || ||||| | || || || || ||||| || || || ||||| || ||||| Sbjct 54873124 AGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54873067 Score = 116 bits (128), Expect = 7e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 193122 GTAATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATA 193181 |||||| | ||| |||| | |||||||| ||||| | ||| | ||| || ||| Sbjct 54872373 GTAATTCACTAACCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGAATG 54872314 Query 193182 TTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGT 193241 |||||||| || | ||||| || || || ||||| || ||||| || ||||||||| Sbjct 54872313 TTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGT 54872254 Query 193242 TGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCG 193301 || || || || ||||| || ||||| || || |||| || | ||| ||| || || Sbjct 54872253 TGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCA 54872194 Query 193302 GAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | || ||||| | || || || || ||||| || || || ||||| || ||||| Sbjct 54872193 GAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54872135 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||| |||| | |||||||| ||||| | ||| | ||| || || |||||||| || Sbjct 54869527 ACCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGA 54869468 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | ||||| || || || ||||| || ||||| || ||||||||||| || || || Sbjct 54869467 CAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGG 54869408 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||||| || ||||| || || |||| || | ||| ||| || || || | || || Sbjct 54869407 AATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTAC 54869348 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| | || || || || ||||| || || || ||||| || ||||| Sbjct 54869347 TTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54869300 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||| |||| | |||||||| ||||| | ||| | ||| || || |||||||| || Sbjct 54870501 ACCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGA 54870442 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | ||||| || || || ||||| || ||||| || ||||||||||| || || || Sbjct 54870441 CAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGG 54870382 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||||| || ||||| || || |||| || | ||| ||| || || || | || || Sbjct 54870381 AATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTAC 54870322 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| | || || || || ||||| || || || ||||| || ||||| Sbjct 54870321 TTCCAACGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54870274 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||| |||| | |||||||| ||||| | ||| | ||| || || |||||||| || Sbjct 54870856 ACCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGA 54870797 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | ||||| || || || ||||| || ||||| || ||||||||||| || || || Sbjct 54870796 CAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGG 54870737 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||||| || ||||| || || |||| || | ||| ||| || || || | || || Sbjct 54870736 AATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTAC 54870677 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| | || || || || ||||| || || || ||||| || ||||| Sbjct 54870676 TTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54870629 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||| |||| | |||||||| ||||| | ||| | ||| || || |||||||| || Sbjct 54872723 ACCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGA 54872664 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | ||||| || || || ||||| || ||||| || ||||||||||| || || || Sbjct 54872663 CAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGG 54872604 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||||| || ||||| || || |||| || | ||| ||| || || || | || || Sbjct 54872603 AATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTAC 54872544 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| | || || || || ||||| || || || ||||| || ||||| Sbjct 54872543 TTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54872496 Score = 96.9 bits (106), Expect = 6e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| |||||||| || | ||||| || || || ||||| || ||||| || ||||| Sbjct 54872117 AATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCT 54872058 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||| || || || ||||| || ||||| || || |||| || | ||| ||| || Sbjct 54872057 CTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGT 54871998 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 || || | || ||||| | || || || || ||||| || || || ||||| || || Sbjct 54871997 GTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTG 54871938 Query 193358 CAT 193360 ||| Sbjct 54871937 CAT 54871935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899597733018480