Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq9 149 6e-31 seq3 123 2e-23 seq5 107 2e-18 >seq9 Length=97764462 Score = 149 bits (164), Expect = 6e-31 Identities = 163/213 (77%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || || |||||||| || || || || ||||| | Sbjct 51001753 GATGCAGATCTTTGTGAAAACACTCACTGGTAAAACCATCACTCTAGATGTAGATGAAGA 51001812 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || | |||| | || ||| | ||||| |||||||| || |||||||| || ||||| Sbjct 51001813 TGATAGCATAGAGAACGTGAAAAAGAAGATTCAAGACAAGGAGGGAATACCACCTGATCA 51001872 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACATGTCAGATTAT 24880 ||||| ||||| ||||||||||||||||| ||||| ||| | ||| || || |||| Sbjct 51001873 GCAACGCTTGATTTTTGCCGGGAAACAGCTCGAGGACGATCG-GCAAC-TGAAAGCTTAT 51001930 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| ||||| || || || || ||||||||| Sbjct 51001931 AACATACAAAAAGAGTCAACTCTCCACTTGGTG 51001963 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | ||||| || || || ||||| || || || ||||| || || Sbjct 51006588 ACCATGCAGATCTTCGTGAAAACTCTCACTGGCAAAACAATCACACTTGAAGTTGAGCCC 51006647 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | |||| || || || ||||| |||||||| ||||| || || ||| Sbjct 51006648 TCAGACACTATCGAAAATGTTAAGGCTAAAATCCAGGACAAAGAGGGAATCCCCCCAGAT 51006707 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || ||||||||||||||||| |||||||| || ||| | | |||| ||||| Sbjct 51006708 CAGCAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGATGGCCGCACTCTGTCCGATTAC 51006767 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || || || || || || || ||||| | || ||| | ||||| Sbjct 51006768 AACATCCAGAAAGAGTCCACTCTCCATTTGGTTCTTCGTTTGAGAGGAGG 51006817 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || ||||| || || || ||||| || || | Sbjct 51006819 ATGCAGATATTTGTCAAAACTCTCACTGGCAAAACAATCACACTTGAAGTTGAGCCCTCA 51006878 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || ||||| |||||||| ||||| || || ||||| Sbjct 51006879 GACACTATCGAAAATGTTAAGGCTAAAATCCAGGACAAAGAGGGAATCCCCCCAGATCAG 51006938 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||||||||| |||||||| || ||| | | |||| ||||| ||| Sbjct 51006939 CAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGATGGCCGCACTCTGTCCGATTACAAC 51006998 Query 24884 ATTCAAAAGGAATCGAC 24900 || || || || || || Sbjct 51006999 ATCCAGAAAGAGTCCAC 51007015 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || ||||| | | ||||| | | Sbjct 51001982 ATGCAAATCTTCGTGAAGACACTTACAGGAAAGACAATTACTTTAAATGTAGAGGGCGAT 51002041 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | |||| || ||| | ||||||| || ||||| |||||||| | || ||| Sbjct 51002042 GACAGTATCGAAAATGTTAAAAAGAAGATCCTTGAAAAAGAGGGAATACCCCTTGACCAA 51002101 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||||||||||||||| || || |||||| | | || || || ||| Sbjct 51002102 CAACGTTTGATCTTTGCCGGGAAGCAACTCGAGGATCACCGCATACTGAGCGACTACAAC 51002161 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || |||||||| | || ||| | || || Sbjct 51002162 ATACAGAAGGAGTCCACGCTTCACTTGGTACTCCGTTTGAGAGGGGG 51002208 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || || |||| || || || || || | || || || ||| Sbjct 51001523 ACAATGCAGATCTTTGTAAAGACTTTAACTGGAAAGACGATCACCATTGACGTTGAGGCC 51001582 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || ||| ||| ||| |||| ||| || || |||||||| ||| || Sbjct 51001583 GCGGAGGAGGTCAAAAAGGTGAAAGAAAAAATCATGGAGAAGGAAGGAATCCCTGTAGAC 51001642 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | || || ||||| || ||||| | |||||| || | || |||||| Sbjct 51001643 CAGCAGAGATTAATATTTGCAGGTAAACAATTAGAGGATGATAGGTCCTTGCTGGATTAT 51001702 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||||||| || ||||| || ||||| | ||| | | ||||| Sbjct 51001703 AACATCCAAAAGGAGTCTACACTTCATCTGGTGCTCCGACTCAGAGGAGG 51001752 >seq3 Length=91555047 Score = 123 bits (136), Expect = 2e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || || || || ||| | ||||||||| || | Sbjct 54870274 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACGTTGGAAGTAGAACCCTCT 54870333 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || ||||| || || || ||| Sbjct 54870334 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54870393 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || |||||| ||||||| |||| ||||||| |||||| Sbjct 54870394 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54870453 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || ||||| || |||| Sbjct 54870454 ATCCAGAAGGAGTCCACACTCCATCTTG 54870481 Score = 123 bits (136), Expect = 2e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || || || || || | ||||||||| || | Sbjct 54872135 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54872194 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || ||||| || || || ||| Sbjct 54872195 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54872254 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || |||||| ||||||| |||| ||||||| |||||| Sbjct 54872255 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54872314 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||| ||||| || ||||| || |||| Sbjct 54872315 ATTCAGAAGGAGTCCACACTCCATCTTG 54872342 Score = 120 bits (132), Expect = 3e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || || || || || | ||||||||| || | Sbjct 54869300 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54869359 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || ||||| || || || ||| Sbjct 54869360 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54869419 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || |||||| ||||||| |||| ||||||| |||||| Sbjct 54869420 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54869479 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || ||||| || |||| Sbjct 54869480 ATCCAGAAGGAGTCCACACTCCATCTTG 54869507 Score = 120 bits (132), Expect = 3e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || || || || || | ||||||||| || | Sbjct 54870629 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54870688 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || ||||| || || || ||| Sbjct 54870689 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54870748 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || |||||| ||||||| |||| ||||||| |||||| Sbjct 54870749 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54870808 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || ||||| || |||| Sbjct 54870809 ATCCAGAAGGAGTCCACACTCCATCTTG 54870836 Score = 120 bits (132), Expect = 3e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || || || || || | ||||||||| || | Sbjct 54872496 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54872555 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || ||||| || || || ||| Sbjct 54872556 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54872615 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || |||||| ||||||| |||| ||||||| |||||| Sbjct 54872616 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54872675 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || ||||| || |||| Sbjct 54872676 ATCCAGAAGGAGTCCACACTCCATCTTG 54872703 Score = 120 bits (132), Expect = 3e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || || || || || | ||||||||| || | Sbjct 54873067 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54873126 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || ||||| || || || ||| Sbjct 54873127 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54873186 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || |||||| ||||||| |||| ||||||| |||||| Sbjct 54873187 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54873246 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || ||||| || |||| Sbjct 54873247 ATCCAGAAGGAGTCCACACTCCATCTTG 54873274 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || || || || || | ||||||||| || | Sbjct 54871935 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54871994 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || ||||| || || || ||| Sbjct 54871995 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54872054 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || |||||| ||||||| |||| ||||||| |||||| Sbjct 54872055 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54872114 Query 24884 ATTCAAAAGGA 24894 ||||| ||||| Sbjct 54872115 ATTCAGAAGGA 54872125 >seq5 Length=54553330 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 139104 CACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGT 139163 ||| ||||| || ||| || || ||||| || | ||||| ||||||||| || || || Sbjct 25738994 CACCTCGTCTGGACTGCTATACTCTACAATCTCTGTACACAGATTACTACATTTTATGGT 25738935 Query 139164 ACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGT 139223 |||| ||||||||||||| ||||||||||||| || ||||| | ||| || ||||| Sbjct 25738934 GCCTAGATTTTGTTGATTGGATTTTCGGTTACAATGGTCCTTGTATAACATGTAAGGTGT 25738875 Query 139224 GCCAGTTTCCACTTGTGTCTCTATAAT 139250 ||||| ||| ||| | ||| || || Sbjct 25738874 ACCAGTCTCCGTTTGGGACTCGATGAT 25738848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449869262074920