Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2121 105 1e-16 >seq2121 Length=81720 Score = 105 bits (116), Expect = 1e-16 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || |||||||||||||| |||||||||||| | |||| || ||| | | Sbjct 12410 TGTATTTGGTAACAGCCTTGGTACCCTCAGAGACGGCGTGCTTAGCCAACTCTCCGGGAA 12469 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || || |||||||| || | || | ||| ||| | |||||| | Sbjct 12470 GGAGGAGACGGACAGCAGTCTGGATTTCTCTGGAGGTGATGGTGGACCTCTTGTTGTAGT 12529 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || | | ||||| | | |||| | |||| || ||||| || || ||||| Sbjct 12530 GAGCAAGTCTGGAAGCCTCAGCGGCGATTCTCTCGAAGATATCGTTCACGAAGCTGTTCA 12589 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||| | || ||| ||||||||||| || | || |||| Sbjct 12590 TGATGCTCATGGCCTTGCTGGAAACTCCAGTGTCAGGGTGCACCTGTTTCAAGACTTTGT 12649 Query 1485710 A 1485710 | Sbjct 12650 A 12650 Score = 105 bits (116), Expect = 1e-16 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || |||||||||||||| |||||||||||| | |||| || ||| | | Sbjct 20158 TGTATTTGGTAACAGCCTTGGTACCCTCAGAGACGGCGTGCTTAGCCAACTCTCCGGGAA 20217 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || || |||||||| || | || | ||| ||| | |||||| | Sbjct 20218 GGAGGAGACGGACAGCAGTCTGGATTTCTCTGGAGGTGATGGTGGACCTCTTGTTGTAGT 20277 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || | | ||||| | | |||| | |||| || ||||| || || ||||| Sbjct 20278 GAGCAAGTCTGGAAGCCTCAGCGGCGATTCTCTCGAAGATATCGTTCACGAAGCTGTTCA 20337 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||| | || ||| ||||||||||| || | || |||| Sbjct 20338 TGATGCTCATGGCCTTGCTGGAAACTCCAGTGTCAGGGTGCACCTGTTTCAAGACTTTGT 20397 Query 1485710 A 1485710 | Sbjct 20398 A 20398 Score = 105 bits (116), Expect = 1e-16 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || |||||||||||||| |||||||||||| | |||| || ||| | | Sbjct 26285 TGTATTTGGTAACAGCCTTGGTACCCTCAGAGACGGCGTGCTTAGCCAACTCTCCGGGAA 26344 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || || |||||||| || | || | ||| ||| | |||||| | Sbjct 26345 GGAGGAGACGGACAGCAGTCTGGATTTCTCTGGAGGTGATGGTGGACCTCTTGTTGTAGT 26404 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || | | ||||| | | |||| | |||| || ||||| || || ||||| Sbjct 26405 GAGCAAGTCTGGAAGCCTCAGCGGCGATTCTCTCGAAGATATCGTTCACGAAGCTGTTCA 26464 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||| | || ||| ||||||||||| || | || |||| Sbjct 26465 TGATGCTCATGGCCTTGCTGGAAACTCCAGTGTCAGGGTGCACCTGTTTCAAGACTTTGT 26524 Query 1485710 A 1485710 | Sbjct 26525 A 26525 Score = 105 bits (116), Expect = 1e-16 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || |||||||||||||| |||||||||||| | |||| || ||| | | Sbjct 32360 TGTATTTGGTAACAGCCTTGGTACCCTCAGAGACGGCGTGCTTAGCCAACTCTCCGGGAA 32419 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || || |||||||| || | || | ||| ||| | |||||| | Sbjct 32420 GGAGGAGACGGACAGCAGTCTGGATTTCTCTGGAGGTGATGGTGGACCTCTTGTTGTAGT 32479 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || | | ||||| | | |||| | |||| || ||||| || || ||||| Sbjct 32480 GAGCAAGTCTGGAAGCCTCAGCGGCGATTCTCTCGAAGATATCGTTCACGAAGCTGTTCA 32539 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||| | || ||| ||||||||||| || | || |||| Sbjct 32540 TGATGCTCATGGCCTTGCTGGAAACTCCAGTGTCAGGGTGCACCTGTTTCAAGACTTTGT 32599 Query 1485710 A 1485710 | Sbjct 32600 A 32600 Score = 105 bits (116), Expect = 1e-16 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || |||||||||||||| |||||||||||| | |||| || ||| | | Sbjct 38532 TGTATTTGGTAACAGCCTTGGTACCCTCAGAGACGGCGTGCTTAGCCAACTCTCCGGGAA 38591 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || || |||||||| || | || | ||| ||| | |||||| | Sbjct 38592 GGAGGAGACGGACAGCAGTCTGGATTTCTCTGGAGGTGATGGTGGACCTCTTGTTGTAGT 38651 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || | | ||||| | | |||| | |||| || ||||| || || ||||| Sbjct 38652 GAGCAAGTCTGGAAGCCTCAGCGGCGATTCTCTCGAAGATATCGTTCACGAAGCTGTTCA 38711 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||| | || ||| ||||||||||| || | || |||| Sbjct 38712 TGATGCTCATGGCCTTGCTGGAAACTCCAGTGTCAGGGTGCACCTGTTTCAAGACTTTGT 38771 Query 1485710 A 1485710 | Sbjct 38772 A 38772 Score = 105 bits (116), Expect = 1e-16 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || |||||||||||||| |||||||||||| | |||| || ||| | | Sbjct 44709 TGTATTTGGTAACAGCCTTGGTACCCTCAGAGACGGCGTGCTTAGCCAACTCTCCGGGAA 44768 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || || |||||||| || | || | ||| ||| | |||||| | Sbjct 44769 GGAGGAGACGGACAGCAGTCTGGATTTCTCTGGAGGTGATGGTGGACCTCTTGTTGTAGT 44828 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || | | ||||| | | |||| | |||| || ||||| || || ||||| Sbjct 44829 GAGCAAGTCTGGAAGCCTCAGCGGCGATTCTCTCGAAGATATCGTTCACGAAGCTGTTCA 44888 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||| | || ||| ||||||||||| || | || |||| Sbjct 44889 TGATGCTCATGGCCTTGCTGGAAACTCCAGTGTCAGGGTGCACCTGTTTCAAGACTTTGT 44948 Query 1485710 A 1485710 | Sbjct 44949 A 44949 Score = 105 bits (116), Expect = 1e-16 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || |||||||||||||| |||||||||||| | |||| || ||| | | Sbjct 50823 TGTATTTGGTAACAGCCTTGGTACCCTCAGAGACGGCGTGCTTAGCCAACTCTCCGGGAA 50882 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || || |||||||| || | || | ||| ||| | |||||| | Sbjct 50883 GGAGGAGACGGACAGCAGTCTGGATTTCTCTGGAGGTGATGGTGGACCTCTTGTTGTAGT 50942 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || | | ||||| | | |||| | |||| || ||||| || || ||||| Sbjct 50943 GAGCAAGTCTGGAAGCCTCAGCGGCGATTCTCTCGAAGATATCGTTCACGAAGCTGTTCA 51002 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||| | || ||| ||||||||||| || | || |||| Sbjct 51003 TGATGCTCATGGCCTTGCTGGAAACTCCAGTGTCAGGGTGCACCTGTTTCAAGACTTTGT 51062 Query 1485710 A 1485710 | Sbjct 51063 A 51063 Score = 105 bits (116), Expect = 1e-16 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || |||||||||||||| |||||||||||| | |||| || ||| | | Sbjct 56952 TGTATTTGGTAACAGCCTTGGTACCCTCAGAGACGGCGTGCTTAGCCAACTCTCCGGGAA 57011 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || || |||||||| || | || | ||| ||| | |||||| | Sbjct 57012 GGAGGAGACGGACAGCAGTCTGGATTTCTCTGGAGGTGATGGTGGACCTCTTGTTGTAGT 57071 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || | | ||||| | | |||| | |||| || ||||| || || ||||| Sbjct 57072 GAGCAAGTCTGGAAGCCTCAGCGGCGATTCTCTCGAAGATATCGTTCACGAAGCTGTTCA 57131 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||| | || ||| ||||||||||| || | || |||| Sbjct 57132 TGATGCTCATGGCCTTGCTGGAAACTCCAGTGTCAGGGTGCACCTGTTTCAAGACTTTGT 57191 Query 1485710 A 1485710 | Sbjct 57192 A 57192 Score = 96.9 bits (106), Expect = 5e-14 Identities = 166/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || |||||||||||||| |||||||||||| | |||| || ||| | | Sbjct 62996 TGTATTTGGTAACAGCCTTGGTACCCTCAGAGACGGCGTGCTTAGCCAACTCTCCGGGAA 63055 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || || |||||||| || | || | ||| ||| | |||||| | Sbjct 63056 GGAGGAGACGGACAGCAGTCTGGATTTCTCTGGAGGTGATGGTGGACCTCTTGTTGTAGT 63115 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || | | ||||| | | |||| | |||| || ||||| || || ||||| Sbjct 63116 GAGCAAGTCTGGAAGCCTCAGCGGCGATTCTCTCGAAGATATCGTTCACGAAGCTGTTCA 63175 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||| | ||| || | | || ||| ||||||||||| || | || |||| Sbjct 63176 TTATGCTCATGGCCTTGCTGAAAACTCCAGTGTCAGGGTGCACCTGTTTCAAGACTTTGT 63235 Query 1485710 A 1485710 | Sbjct 63236 A 63236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915710378587121