Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq9 100 2e-16 seq3 93.3 3e-14 >seq9 Length=97764462 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| ||||| | || |||| || | ||| ||| ||||| ||||| || || | Sbjct 51006819 TTCCTCCTCTCAAACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCGG 51006760 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || |||| |||| || || || |||||||| ||||||| || ||||| ||| | | Sbjct 51006759 ACAGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGGG 51006700 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||| ||||| | ||||| || || | | || | || || ||| | Sbjct 51006699 GGATTCCCTCTTTGTCCTGGATTTTAGCCTTAACATTTTCGATAGTGTCTGAGGGCTCAA 51006640 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | |||| || || || || || ||||| || || || |||||||||||| Sbjct 51006639 CTTCAAGTGTGATTGTTTTGCCAGTGAGAGTTTTCACGAAGATCTGCATG 51006590 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| || |||||| || |||||||| ||| | | | ||||| Sbjct 51001737 AGCACCAGATGAAGTGTAGACTCCTTTTGGATGTTATAATCCAGCAAGGACCTATCATCC 51001678 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || | ||| || || || || || | || ||||||||| || | || ||||| || Sbjct 51001677 TCTAATTGTTTACCTGCAAATATTAATCTCTGCTGGTCTACAGGGATTCCTTCCTTCTCC 51001618 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||||| ||| || | | | || |||||| || |||| ||| || ||| Sbjct 51001617 ATGATTTTTTCTTTCACCTTTTTGACCTCCTCCGCGGCCTCAACGTCAATGGTGATCGTC 51001558 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | |||||||||||||||||||| Sbjct 51001557 TTTCCAGTTAAAGTCTTTACAAAGATCTGCAT 51001526 >seq3 Length=91555047 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||||||||| || || | | | || |||| || || || || || Sbjct 54872126 CTCCTTCTGAATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAA 54872067 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || || |||||| | || | |||||||| || | || || ||||| | Sbjct 54872066 GATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGAC--A 54872009 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | ||| || || || || | ||| |||||||| || || |||||||| Sbjct 54872008 TTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTC 54871949 Query 34964 ACAAAGATCTGCAT 34977 ||||| |||||||| Sbjct 54871948 ACAAAAATCTGCAT 54871935 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||||||||| || || | | | || |||| || || || || || Sbjct 54872326 CTCCTTCTGAATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAA 54872267 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || || |||||| | || | |||||||| || | || || ||||| | Sbjct 54872266 GATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGAC--A 54872209 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | ||| || || || || | ||| |||||||| || || |||||||| Sbjct 54872208 TTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTC 54872149 Query 34964 ACAAAGATCTGCAT 34977 ||||| |||||||| Sbjct 54872148 ACAAAAATCTGCAT 54872135 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||||||||| || || | | | || |||| || || || || || Sbjct 54869491 CTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAA 54869432 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || || |||||| | || | |||||||| || | || || ||||| | Sbjct 54869431 GATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGAC--A 54869374 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | ||| || || || || | ||| |||||||| || || |||||||| Sbjct 54869373 TTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTC 54869314 Query 34964 ACAAAGATCTGCATGA 34979 ||||| |||||||||| Sbjct 54869313 ACAAAAATCTGCATGA 54869298 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 |||||| || | | || || || || | ||| ||||||||| ||||||||||| || Sbjct 54873294 TCCTCCTCTGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGA 54873235 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 || | | | || |||| || || || || ||||||| || || |||||| | || Sbjct 54873234 CAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGG 54873175 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCG 34927 | |||||||| || | || || ||||| || || || | ||| || || Sbjct 54873174 AATTCCCTCCTTATCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCAGAGGGTTCT 54873117 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | ||| |||||||| || || |||||||| ||||| |||||||| Sbjct 54873116 ACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54873067 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||||||||| || || | | | || |||| || || || || || Sbjct 54870820 CTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAA 54870761 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || || |||||| | || | |||||||| || | || || ||||| | Sbjct 54870760 GATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGAC--A 54870703 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | ||| || || || || | ||| |||||||| || || |||||||| Sbjct 54870702 TTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTC 54870643 Query 34964 ACAAAGATCTGCAT 34977 ||||| |||||||| Sbjct 54870642 ACAAAAATCTGCAT 54870629 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||||||||| || || | | | || |||| || || || || || Sbjct 54872687 CTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAA 54872628 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || || |||||| | || | |||||||| || | || || ||||| | Sbjct 54872627 GATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGAC--A 54872570 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | ||| || || || || | ||| |||||||| || || |||||||| Sbjct 54872569 TTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTC 54872510 Query 34964 ACAAAGATCTGCAT 34977 ||||| |||||||| Sbjct 54872509 ACAAAAATCTGCAT 54872496 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||||||||| || || | | | || |||| || || || || || Sbjct 54870465 CTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAA 54870406 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || || |||||| | || | |||||||| || | || || ||||| | Sbjct 54870405 GATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGAC--A 54870348 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | ||| || || || || | || |||||||| || || |||||||| Sbjct 54870347 TTCTCAATGGTGTCAGAGGGTTCTACTTCCAACGTGATGGTCTTGCCTGTCAGGGTCTTC 54870288 Query 34964 ACAAAGATCTGCAT 34977 ||||| |||||||| Sbjct 54870287 ACAAAAATCTGCAT 54870274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325672798289141