Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3 185 2e-41 seq9 143 5e-29 >seq3 Length=91555047 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| || || | || || || || || ||||| || ||||| || || Sbjct 54873293 CCTCCTCTGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGAC 54873234 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || |||| ||||| || | ||||| ||||||||||| | ||| ||||| ||||| || Sbjct 54873233 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 54873174 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| |||||||| || ||||| || || ||||| ||||| || ||| ||||||||| Sbjct 54873173 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACT 54873114 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||||||||||| ||||| ||||| |||||||| Sbjct 54873113 TCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54873067 Score = 183 bits (202), Expect = 6e-41 Identities = 181/234 (77%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 82577 TCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATA 82636 |||| |||||||| | ||| || || | || || || || || ||||| || ||||| Sbjct 54870507 TCACTAACCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATA 54870448 Query 82637 ATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATC 82696 || || || |||| ||||| || | ||||| ||||||||||| | ||| ||||| || Sbjct 54870447 GTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTC 54870388 Query 82697 TGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG 82756 ||| || ||||| |||||||| || ||||| || || ||||| ||||| || ||| || Sbjct 54870387 TGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGG 54870328 Query 82757 TTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||||| || || ||||||||||||| ||||| ||||| |||||||| Sbjct 54870327 TTCTACTTCCAACGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54870274 Score = 183 bits (202), Expect = 6e-41 Identities = 181/234 (77%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 82577 TCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATA 82636 |||| |||||||| | ||| || || | || || || || || ||||| || ||||| Sbjct 54872368 TCACTAACCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGAATGTTATA 54872309 Query 82637 ATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATC 82696 || || || |||| ||||| || | ||||| ||||||||||| | ||| ||||| || Sbjct 54872308 GTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTC 54872249 Query 82697 TGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG 82756 ||| || ||||| |||||||| || ||||| || || ||||| ||||| || ||| || Sbjct 54872248 TGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGG 54872189 Query 82757 TTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||||| || || ||||||||||||| ||||| ||||| |||||||| Sbjct 54872188 TTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54872135 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||||| | ||| || || | || || || || || ||||| || ||||| || || Sbjct 54869527 ACCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGA 54869468 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || |||| ||||| || | ||||| ||||||||||| | ||| ||||| ||||| || Sbjct 54869467 CAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGG 54869408 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||| |||||||| || ||||| || || ||||| ||||| || ||| |||||||| Sbjct 54869407 AATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTAC 54869348 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || || ||||||||||||| ||||| ||||| |||||||| Sbjct 54869347 TTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54869300 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||||| | ||| || || | || || || || || ||||| || ||||| || || Sbjct 54870856 ACCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGA 54870797 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || |||| ||||| || | ||||| ||||||||||| | ||| ||||| ||||| || Sbjct 54870796 CAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGG 54870737 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||| |||||||| || ||||| || || ||||| ||||| || ||| |||||||| Sbjct 54870736 AATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTAC 54870677 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || || ||||||||||||| ||||| ||||| |||||||| Sbjct 54870676 TTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54870629 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||||| | ||| || || | || || || || || ||||| || ||||| || || Sbjct 54872723 ACCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGA 54872664 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || |||| ||||| || | ||||| ||||||||||| | ||| ||||| ||||| || Sbjct 54872663 CAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGG 54872604 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||| |||||||| || ||||| || || ||||| ||||| || ||| |||||||| Sbjct 54872603 AATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTAC 54872544 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || || ||||||||||||| ||||| ||||| |||||||| Sbjct 54872543 TTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54872496 Score = 168 bits (186), Expect = 1e-36 Identities = 152/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 || ||||| || ||||| || || || |||| ||||| || | ||||| ||||||||| Sbjct 54872125 TCCTTCTGAATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAG 54872066 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || | ||| ||||| ||||| || ||||| |||||||| || ||||| || || ||||| Sbjct 54872065 ATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTC 54872006 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 ||||| || ||| |||||||||||||| || || ||||||||||||| ||||| ||| Sbjct 54872005 TCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACA 54871946 Query 82800 AATATCTGCAT 82810 || |||||||| Sbjct 54871945 AAAATCTGCAT 54871935 >seq9 Length=97764462 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||||||||| ||||| || || ||||| || |||||||| || || ||||| || Sbjct 51006817 CCTCCTCTCAAACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCGGAC 51006758 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || |||||||| |||||||| | | || |||||||| || Sbjct 51006757 AGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGGGGG 51006698 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| || || || || || || || || |||||||| || || || || || ||| Sbjct 51006697 ATTCCCTCTTTGTCCTGGATTTTAGCCTTAACATTTTCGATAGTGTCTGAGGGCTCAACT 51006638 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || ||||| || | || || || || |||||||| Sbjct 51006637 TCAAGTGTGATTGTTTTGCCAGTGAGAGTTTTCACGAAGATCTGCAT 51006591 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || |||||||| || || ||||| || ||| | | || ||||| || |||||||| Sbjct 51007015 GTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAAGCTGTTTTCCG 51006956 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 |||||||| | | || |||||||| || ||||| || || || || || || || || Sbjct 51006955 GCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTA 51006896 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 |||||||| || || || || || ||||| | || || || ||||| || | || Sbjct 51006895 ACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGTGAGAGTT 51006836 Query 82794 TTTACAAATATCTGCATT 82811 || ||||||||||||||| Sbjct 51006835 TTGACAAATATCTGCATT 51006818 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | ||| || || ||||| ||||| || ||||| ||||| |||||| | Sbjct 51001980 CCTCCCCTAAGACGGAGCACCAAGTGGAGAGTTGACTCTTTTTGTATGTTATAAGCTTTC 51001921 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||| || || ||||| || ||||| || | | ||| ||||| || ||| Sbjct 51001920 AGTTGCCGATCGTCCTCGAGCTGTTTCCCGGCAAAAATCAAGCGTTGCTGATCAGGTGGT 51001861 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| ||||||||||| ||| || || || || |||||| ||||| Sbjct 51001860 ATTCCCTCCTTGTCTTGAATCTTCTTTTTCACGTTCTCTATGCTATCATCTTCATCTACA 51001801 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || || || || || | || || ||||| |||||||| Sbjct 51001800 TCTAGAGTGATGGTTTTACCAGTGAGTGTTTTCACAAAGATCTGCAT 51001754 Score = 107 bits (118), Expect = 4e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||||||||| || || ||||| || || || || |||||||| || || || Sbjct 51002209 ACCCCCTCTCAAACGGAGTACCAAGTGAAGCGTGGACTCCTTCTGTATGTTGTAGTCGCT 51002150 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || || | || || ||||| || || |||||||| | | |||||| || | || Sbjct 51002149 CAGTATGCGGTGATCCTCGAGTTGCTTCCCGGCAAAGATCAAACGTTGTTGGTCAAGGGG 51002090 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||| || || || | ||||| ||| |||||||| || | |||| ||||| Sbjct 51002089 TATTCCCTCTTTTTCAAGGATCTTCTTTTTAACATTTTCGATACTGTCATCGCCCTCTAC 51002030 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||||| || ||||| ||||| | ||||| || || || |||||| Sbjct 51002029 ATTTAAAGTAATTGTCTTTCCTGTAAGTGTCTTCACGAAGATTTGCATT 51001981 Score = 105 bits (116), Expect = 1e-17 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATC-AGA 82642 |||||||| | || || || | || || ||||| || || || || |||||||| || Sbjct 51001752 CCTCCTCTGAGTCGGAGCACCAGATGAAGTGTAGACTCCTTTTGGATGTTATAATCCAGC 51001693 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | ||| | || |||| |||||| || ||||| |||| ||| || || ||| ||| Sbjct 51001692 AAGGAC-CTATCATCCTCTAATTGTTTACCTGCAAATATTAATCTCTGCTGGTCTACAGG 51001634 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||||||||| || || ||| |||| || |||| | | || | || || Sbjct 51001633 GATTCCTTCCTTCTCCATGATTTTTTCTTTCACCTTTTTGACCTCCTCCGCGGCCTCAAC 51001574 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || | || |||||||| || || || ||||||||||| ||||||||| || Sbjct 51001573 GTCAATGGTGATCGTCTTTCCAGTTAAAGTCTTTACAAAGATCTGCATTGTT 51001522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981763811088221